[med-svn] [Git][med-team/python-skbio][debian/experimental] 53 commits: debian/control: add depends on various python doc packages to fix intersphinx linking

Sun Jan 22 16:40:35 GMT 2023

Michael R. Crusoe pushed to branch debian/experimental at Debian Med / python-skbio

Commits:
06332c23 by Michael R. Crusoe at 2021-02-01T11:49:59+01:00
debian/control: add depends on various python doc packages to fix intersphinx linking

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0104ce78 by Michael R. Crusoe at 2021-02-01T11:54:22+01:00
routine-update: Standards-Version: 4.5.1

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91bfe668 by Michael R. Crusoe at 2021-02-01T11:54:34+01:00
Update renamed lintian tag names in lintian overrides.

Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html

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8a782ffc by Michael R. Crusoe at 2021-02-01T12:13:57+01:00
Silence some lintian false-positives

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2828703b by Michael R. Crusoe at 2021-02-01T12:13:57+01:00
routine-update: Ready to upload to unstable

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4039bfd8 by Steffen Moeller at 2021-09-06T17:52:42+02:00
Cosmetics and closing 991981

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050ec8a7 by Andreas Tille at 2021-10-13T08:46:19+02:00
Replace add_javascript() in sphinx config

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38bc9129 by Andreas Tille at 2021-10-13T08:59:07+02:00
Also fix add_stylesheet

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4687f235 by Andreas Tille at 2021-10-13T09:16:52+02:00
For the moment the 4 tests that are broken due to bug #992676 are excluded

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10d0de06 by Andreas Tille at 2021-10-13T09:22:41+02:00
Upload to unstable

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42686d31 by Andreas Tille at 2021-11-30T14:05:41+01:00
Remove Tim Booth from Uploaders (Thanks to Tim for all his work)

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2616e52a by Andreas Tille at 2021-11-30T14:07:52+01:00
Regenerate the .c files at build time by cython3

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b2fce2be by Graham Inggs at 2021-12-03T17:22:50+02:00
Cherry-pick upstream commit to fix dtypes and warnings

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395bb024 by Graham Inggs at 2021-12-03T17:23:56+02:00
Drop skip_tests_failung_due_to_scipy.patch, no longer needed

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78913d16 by Graham Inggs at 2021-12-03T17:24:55+02:00
Prepare for upload to unstable

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c257130f by Andreas Tille at 2022-08-25T17:46:30+02:00
routine-update: New upstream version

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67fffa88 by Andreas Tille at 2022-08-25T17:46:30+02:00
New upstream version 0.5.7
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37c271e0 by Andreas Tille at 2022-08-25T17:46:43+02:00
Update upstream source from tag 'upstream/0.5.7'

Update to upstream version '0.5.7'
with Debian dir d5d3175d153b2cb0a025ec058fd791eb64c08285
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ec02f99d by Andreas Tille at 2022-08-25T17:46:43+02:00
routine-update: Standards-Version: 4.6.1

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999dde60 by Andreas Tille at 2022-08-25T17:52:23+02:00
Proper file name for upstream download

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de86b294 by Andreas Tille at 2022-08-25T17:58:28+02:00
Updated some patches but stopped when it comes to simde patch

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7f80a763 by Étienne Mollier at 2022-12-03T23:00:09+01:00
simde patch: remove; implemented upstream.

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9da7065f by Étienne Mollier at 2022-12-03T23:01:07+01:00
soften_test patch: remove; implemented upstream.

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cb8795eb by Étienne Mollier at 2022-12-03T23:05:44+01:00
pandas1.1-ordination-fix.patch: remove; applied upstream.

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bb860208 by Étienne Mollier at 2022-12-03T23:07:21+01:00
pandas1.1-valueerror.patch: remove; applied upstream.

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37bc7d60 by Étienne Mollier at 2022-12-03T23:08:21+01:00
local_inventory patch: unfuzz.

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dba145ca by Étienne Mollier at 2022-12-03T23:09:31+01:00
sphinx_add_javascript.patch: remove; fixed upstream.

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2119df86 by Étienne Mollier at 2022-12-03T23:11:35+01:00
fix-dtype-precision-warnings.patch: remove; applied upstream.

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3e5a857a by Étienne Mollier at 2022-12-03T23:12:18+01:00
update changelog

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a88c5aff by Étienne Mollier at 2022-12-03T23:23:44+01:00
d/rules: include build root in CPPFLAGS.

This allows source code including the simde-sse2.h wrapper to find
it adequately.

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b68aca0d by Étienne Mollier at 2022-12-03T23:25:50+01:00
update changelog.

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8f0a0b73 by Nilesh Patra at 2022-12-21T13:44:30+05:30
Add patch to fix FTBFS (Closes: #1026474)

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f7dee501 by Nilesh Patra at 2022-12-21T13:44:51+05:30
Upload to unstable

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bdebac1e by Nilesh Patra at 2022-12-21T14:16:40+05:30
Merge branch 'debian-0.5.6-7'

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2419da72 by Nilesh Patra at 2022-12-21T14:18:28+05:30
Update d/p/s

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b5e737c4 by Nilesh Patra at 2023-01-04T23:39:42+05:30
d/watch: Use tags instead of releases as the latter is hard to maintain

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f2493a66 by Nilesh Patra at 2023-01-04T23:39:46+05:30
New upstream version 0.5.8
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35d8f410 by Nilesh Patra at 2023-01-04T23:39:53+05:30
Update upstream source from tag 'upstream/0.5.8'

Update to upstream version '0.5.8'
with Debian dir f8641fc7b216214814647a2f90cabc6a0863c962
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5715af6a by Nilesh Patra at 2023-01-04T23:40:15+05:30
Drop precision_bug.patch, which has been accounted for upstream

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a9cbf400 by Nilesh Patra at 2023-01-04T23:40:34+05:30
Re-diff patch

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f32d41fd by Nilesh Patra at 2023-01-04T23:54:43+05:30
Remove B-D on python-matplotlib-doc, update patch to not reference it in intersphinx docs

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7c2f2874 by Nilesh Patra at 2023-01-05T01:06:52+05:30
Add patch to build with older scipy

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e4d5dd46 by Nilesh Patra at 2023-01-05T01:06:52+05:30
Add B-D on python3-h5py

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f4b0f487 by Nilesh Patra at 2023-01-05T01:06:52+05:30
Add patch to work-around a test

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eec6b61c by Nilesh Patra at 2023-01-05T01:06:52+05:30
Remove override_dh_python3 which is not needed now

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9e30a680 by Nilesh Patra at 2023-01-05T01:26:20+05:30
Also add a depends on h5py

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7bc1830a by Nilesh Patra at 2023-01-05T01:26:20+05:30
Interim d/ch

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47ea0ffb by Nilesh Patra at 2023-01-05T02:35:31+05:30
Disable i386 in salsa-ci.yml

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3456fda5 by Andreas Tille at 2023-01-05T07:08:21+01:00
routine-update: Standards-Version: 4.6.2

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c324a961 by Andreas Tille at 2023-01-05T07:10:06+01:00
Automated changes by lintian-brush

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d9677bdd by Andreas Tille at 2023-01-05T07:57:03+01:00
Update lintian override info format in d/python3-skbio.lintian-overrides on line 5.

Changes-By: lintian-brush
Fixes: lintian: mismatched-override
See-also: https://lintian.debian.org/tags/mismatched-override.html

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cd73d881 by Andreas Tille at 2023-01-05T08:09:07+01:00
Upload to unstable

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06a6f4e6 by Michael R. Crusoe at 2023-01-22T17:38:15+01:00
Experimental rebuild with SIMDe 0.7.3~0git20230118123246.d1e75cd

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30 changed files:

- .coveragerc
- + .dockerignore
- + .editorconfig
- − .travis.yml
- CHANGELOG.md
- − CONTRIBUTING.md
- COPYING.txt → LICENSE.txt
- MANIFEST.in
- Makefile
- − PULL_REQUEST_TEMPLATE.md
- README.rst
- + aarch64.Dockerfile
- − asv.conf.json
- − benchmarks/__init__.py
- − benchmarks/benchmarks.py
- checklist.py
- + ci/aarch64.conda_requirements.txt
- + ci/aarch64.requirements.txt
- + ci/conda_host_env.yml
- ci/conda_requirements.txt
- − ci/matplotlibrc
- − ci/pip_requirements.txt
- + ci/requirements.doc.txt
- + ci/requirements.lint.txt
- + ci/requirements.test.txt
- debian/changelog
- debian/control
- debian/patches/0002-use-libsww-as-library-not-embedded-src.patch
- − debian/patches/ignore_failing_patches.patch
- + debian/patches/local_inventory

The diff was not included because it is too large.

View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/28aadcd2174badb84878a826f18b515b9e515e10...06a6f4e6eff68bb524d5fe5f303901b546428fd2

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/28aadcd2174badb84878a826f18b515b9e515e10...06a6f4e6eff68bb524d5fe5f303901b546428fd2
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