[med-svn] [Git][med-team/pbcopper][debian/experimental] 32 commits: routine-update: New upstream version

Sun Jan 22 16:55:30 GMT 2023

Michael R. Crusoe pushed to branch debian/experimental at Debian Med / pbcopper

Commits:
afac726e by Michael R. Crusoe at 2020-12-23T18:17:57+01:00
routine-update: New upstream version

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3f036d0c by Michael R. Crusoe at 2020-12-23T18:17:58+01:00
New upstream version 1.9.0+dfsg
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0f3b7ca2 by Michael R. Crusoe at 2020-12-23T18:17:59+01:00
Update upstream source from tag 'upstream/1.9.0+dfsg'

Update to upstream version '1.9.0+dfsg'
with Debian dir 1fdaa85c814bc83be18e0de856765bb054b56129
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fd5576c9 by Michael R. Crusoe at 2020-12-23T18:18:00+01:00
routine-update: Standards-Version: 4.5.1

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0a336303 by Michael R. Crusoe at 2021-01-21T13:43:18+01:00
Upstream now uses simde, adapt accordingly

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4080d87f by Michael R. Crusoe at 2021-01-21T13:44:19+01:00
remove unused patch

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8b29001d by Michael R. Crusoe at 2021-01-21T14:24:17+01:00
bump SO version

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cae59c32 by Steffen Möller at 2021-07-11T16:09:06+00:00
Update metadata - added ref to conda
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4e792ad0 by Steffen Moeller at 2021-09-02T14:55:49+02:00
routine-update: Fix watchfile to detect new versions on github

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c243823c by Andreas Tille at 2021-09-27T16:58:45+02:00
routine-update: New upstream version

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4cba6b1c by Andreas Tille at 2021-09-27T16:58:45+02:00
New upstream version 1.9.3+dfsg
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4fecc05e by Andreas Tille at 2021-09-27T16:58:48+02:00
Update upstream source from tag 'upstream/1.9.3+dfsg'

Update to upstream version '1.9.3+dfsg'
with Debian dir 086e4a15d05ac26618a6eb42eee97c20200cff06
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9d35e3fb by Andreas Tille at 2021-09-27T16:58:48+02:00
routine-update: Standards-Version: 4.6.0

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2b4123c3 by Andreas Tille at 2021-09-27T16:58:55+02:00
Remove unnecessary Team Upload line in changelog.

Changes-By: lintian-brush

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d7e27603 by Andreas Tille at 2021-09-27T17:05:00+02:00
Refresh patches

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2b8c0dd5 by Andreas Tille at 2021-09-27T17:15:38+02:00
bump SO version to 1.9.3

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a1a66ded by Andreas Tille at 2021-09-27T17:22:04+02:00
Upload to unstable

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c6e72927 by Andreas Tille at 2021-11-08T21:16:15+01:00
Fix watch file

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9af0d2ac by Andreas Tille at 2021-11-08T21:22:28+01:00
routine-update: Ready to upload to unstable

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18b6313e by Andreas Tille at 2021-12-02T08:58:36+01:00
Not uploaded since  1.9.3+dfsg-1  hangs in new queue

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651aa1bb by Andreas Tille at 2021-12-02T21:14:15+01:00
routine-update: Ready to upload to unstable

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f4fb53a5 by Andreas Tille at 2021-12-05T16:40:05+01:00
Mention CC0-1.0 in copyright

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ffdb345d by Andreas Tille at 2022-02-17T19:36:19+01:00
New upstream version 2.0.0+dfsg
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e338e3cb by Andreas Tille at 2022-02-17T19:36:19+01:00
routine-update: New upstream version

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8f06a71e by Andreas Tille at 2022-02-17T19:36:22+01:00
Update upstream source from tag 'upstream/2.0.0+dfsg'

Update to upstream version '2.0.0+dfsg'
with Debian dir c850722b90558ebbc425bc001bdd3efbda90d44b
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f17285ea by Andreas Tille at 2022-02-17T19:40:37+01:00
Update patches

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2b334f45 by Andreas Tille at 2022-02-17T20:06:18+01:00
Follow upstream soname bump

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6ac8309c by Andreas Tille at 2022-02-17T20:09:45+01:00
Upload to unstable

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6b23e53d by Andreas Tille at 2022-02-24T17:59:36+01:00
Skip two flaky tests

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92b642cc by Andreas Tille at 2022-02-24T18:26:27+01:00
Need to exclude more tests

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f9bdf2c5 by Andreas Tille at 2022-02-24T18:30:33+01:00
Upload to unstable

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7b4168d8 by Michael R. Crusoe at 2023-01-22T17:52:15+01:00
Experimental rebuild with SIMDe 0.7.3~0git20230118123246.d1e75cd

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30 changed files:

- .gitignore
- CHANGELOG.md
- debian/changelog
- debian/control
- debian/copyright
- − debian/patches/boost_optional.patch
- debian/patches/series
- − debian/patches/simde-ppc64el.patch
- debian/patches/simde.patch
- + debian/patches/skip_test_Parallel_FireAndForget.patch
- debian/patches/static+shared_lib.patch
- debian/upstream/metadata
- debian/watch
- include/meson.build
- include/pbcopper/LibraryInfo.h
- include/pbcopper/PbcopperConfig.h
- + include/pbcopper/algorithm/Heteroduplex.h
- + include/pbcopper/algorithm/internal/HeteroduplexUtils.h
- include/pbcopper/align/AffineAlignment.h
- include/pbcopper/align/AlignConfig.h
- include/pbcopper/align/BandedChainAlignment.h
- include/pbcopper/align/ChainSeeds.h
- include/pbcopper/align/ChainSeedsConfig.h
- + include/pbcopper/align/EdlibAlign.h
- include/pbcopper/align/FindSeeds.h
- + include/pbcopper/align/GlobalLocalAlignment.h
- include/pbcopper/align/LinearAlignment.h
- include/pbcopper/align/LocalAlignment.h
- include/pbcopper/align/PairwiseAlignment.h
- include/pbcopper/align/Seed.h

The diff was not included because it is too large.

View it on GitLab: https://salsa.debian.org/med-team/pbcopper/-/compare/59a9b05c2d84b3016c68c1b098b84caefeda7d19...7b4168d811f2919d92accc1798818d1cffa20618

-- 
View it on GitLab: https://salsa.debian.org/med-team/pbcopper/-/compare/59a9b05c2d84b3016c68c1b098b84caefeda7d19...7b4168d811f2919d92accc1798818d1cffa20618
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