[med-svn] [Git][med-team/skesa][master] 4 commits: Start work on skesa 2.4.0-6.

[Aaron M. Ucko (@ucko)]

Aaron M. Ucko pushed to branch master at Debian Med / skesa


Commits:
01c51326 by Aaron M. Ucko at 2023-01-22T13:32:27-05:00
Start work on skesa 2.4.0-6.

- - - - -
16344bf4 by Aaron M. Ucko at 2023-01-22T13:33:17-05:00
debian/patches/no_sse4.2.patch (new): Don't use SSE 4.2.

It's a baseline violation on x86, and entirely unavailable elsewhere.

- - - - -
fcf90e16 by Aaron M. Ucko at 2023-01-22T13:34:04-05:00
d/patches/hardening.patch: Reinstate use of dpkg-supplied CFLAGS.

The addition accidentally got lost in the course of updating
use_debian_packaged_ngs-sdk.patch.

- - - - -
c9036203 by Aaron M. Ucko at 2023-01-22T13:35:16-05:00
Finalize skesa 2.4.0-6 for unstable.

- - - - -


4 changed files:

- debian/changelog
- debian/patches/hardening.patch
- + debian/patches/no_sse4.2.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+skesa (2.4.0-6) unstable; urgency=medium
+
+  * debian/patches/hardening.patch: Reinstate use of dpkg-supplied CFLAGS.
+    The addition accidentally got lost in the course of updating 
+    use_debian_packaged_ngs-sdk.patch.
+  * debian/patches/no_sse4.2.patch (new): Don't use SSE 4.2.  It's a
+    baseline violation on x86, and entirely unavailable elsewhere.
+
+ -- Aaron M. Ucko <ucko at debian.org>  Sun, 22 Jan 2023 13:35:16 -0500
+
 skesa (2.4.0-5) unstable; urgency=medium
 
   [ Andreas Tille ]


=====================================
debian/patches/hardening.patch
=====================================
@@ -6,8 +6,12 @@ Index: b/Makefile
 ===================================================================
 --- a/Makefile
 +++ b/Makefile
-@@ -43,7 +43,7 @@ CC = c++ -std=c++11 -fdiagnostics-color=
- CFLAGS = -Wall -Wno-format-y2k  -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \
+@@ -40,10 +40,10 @@ NGS_INCL := -I $(NGS_PATH)/include
+ NGS_LIB := -L $(NGS_PATH)/lib64
+ 
+ CC = c++ -std=c++11 -fdiagnostics-color=never
+-CFLAGS = -Wall -Wno-format-y2k  -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \
++CFLAGS += -Wall -Wno-format-y2k  -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \
           -fomit-frame-pointer -msse4.2 $(BOOST_INCL) $(NGS_INCL) $(VDB_INCL)
  
 -LIBS = -lngs-c++ -lncbi-vdb -lzstd \


=====================================
debian/patches/no_sse4.2.patch
=====================================
@@ -0,0 +1,13 @@
+Index: b/Makefile
+===================================================================
+--- a/Makefile
++++ b/Makefile
+@@ -41,7 +41,7 @@ NGS_LIB := -L $(NGS_PATH)/lib64
+ 
+ CC = c++ -std=c++11 -fdiagnostics-color=never
+ CFLAGS += -Wall -Wno-format-y2k  -pthread -fPIC -O3 -finline-functions -fstrict-aliasing \
+-         -fomit-frame-pointer -msse4.2 $(BOOST_INCL) $(NGS_INCL) $(VDB_INCL)
++         -fomit-frame-pointer $(BOOST_INCL) $(NGS_INCL) $(VDB_INCL)
+ 
+ LIBS += -lngs-c++ -lncbi-vdb -lzstd \
+        $(BOOST_LIB) \


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 use_debian_packaged_ngs-sdk.patch
 hardening.patch
 link_boost_dynamically.patch
+no_sse4.2.patch



View it on GitLab: https://salsa.debian.org/med-team/skesa/-/compare/5208d7218d3c5043c6950f140981271f4bcc6467...c903620376731d46db778c6bdb693873aea6a0cb

-- 
View it on GitLab: https://salsa.debian.org/med-team/skesa/-/compare/5208d7218d3c5043c6950f140981271f4bcc6467...c903620376731d46db778c6bdb693873aea6a0cb
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230122/ddb86149/attachment-0001.htm>