[med-svn] [Git][med-team/hyphy][upstream] New upstream version 2.5.46+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / hyphy


Commits:
7631d8cd by Andreas Tille at 2023-01-24T15:45:15+01:00
New upstream version 2.5.46+dfsg
- - - - -


24 changed files:

- + .github/workflows/codeql.yml
- CMakeLists.txt
- res/TemplateBatchFiles/CodonToProtein.bf
- res/TemplateBatchFiles/MSS-selector-2.bf
- res/TemplateBatchFiles/MSS-selector.bf
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
- res/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
- res/TemplateBatchFiles/libv3/models/codon/MSS.bf
- res/TemplateBatchFiles/libv3/models/model_functions.bf
- res/TemplateBatchFiles/libv3/models/parameters.bf
- res/TemplateBatchFiles/libv3/tasks/ancestral.bf
- res/TemplateBatchFiles/libv3/tasks/trees.bf
- src/core/batchlan.cpp
- src/core/batchlanruntime.cpp
- src/core/calcnode.cpp
- src/core/dataset.cpp
- src/core/dataset_filter.cpp
- src/core/global_things.cpp
- src/core/include/likefunc.h
- src/core/include/matrix.h
- src/core/likefunc.cpp
- src/core/likefunc2.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/7631d8cdddee8bae17c8ca775d052f5445bc1621

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/commit/7631d8cdddee8bae17c8ca775d052f5445bc1621
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