[med-svn] [Git][med-team/emperor][master] 5 commits: Build against scipy 1.10 and skbio in experimental

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / emperor


Commits:
f9337e98 by Andreas Tille at 2023-01-26T14:39:11+01:00
Build against scipy 1.10 and skbio in experimental

- - - - -
f2499b92 by Andreas Tille at 2023-01-26T14:47:30+01:00
Fix typo in d/control: Section

- - - - -
cdabfa8d by Andreas Tille at 2023-01-26T14:49:00+01:00
Respect nocheck in DEB_BUILD_OPTIONS

- - - - -
bb9e825c by Andreas Tille at 2023-01-26T14:51:07+01:00
Silence lintian about fonts

- - - - -
5333833f by Andreas Tille at 2023-01-26T14:56:32+01:00
Upload to experimental

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/python3-emperor.lintian-overrides
- debian/rules
- debian/salsa-ci.yml


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+emperor (1.0.3+ds-7exp1) experimental; urgency=medium
+
+  * Team upload
+  * Build against scipy 1.10 and skbio in experimental
+    Closes: #1029689
+  * Fix typo in d/control: Section
+  * Respect nocheck in DEB_BUILD_OPTIONS
+  * Silence lintian about fonts
+
+ -- Andreas Tille <tille at debian.org>  Thu, 26 Jan 2023 13:57:41 +0100
+
 emperor (1.0.3+ds-7) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -13,7 +13,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-numpydoc,
                python3-numpy <!nocheck>,
                python3-pandas <!nocheck>,
-               python3-skbio <!nocheck>,
+               python3-skbio (>= 0.5.8-2exp1~) <!nocheck>,
                python3-future <!nocheck>,
                python3-click <!nocheck>,
                jsdoc-toolkit <!nocheck>,
@@ -28,16 +28,16 @@ Vcs-Git: https://salsa.debian.org/med-team/emperor.git
 
 Package: python3-emperor
 Architecture: all
-Secction: python
+Section: python
 Depends: ${python3:Depends},
          ${misc:Depends},
          python3-numpy,
-         python3-scipy,
+         python3-scipy (>= 1.9),
          python3-click,
          python3-pandas,
          python3-jinja2,
          python3-future,
-         python3-skbio,
+         python3-skbio (>= 0.5.8-2exp1~),
          libjs-jquery-ui
 Description: visualizing high-throughput microbial community data
  Emperor is an interactive next generation tool for the analysis,


=====================================
debian/python3-emperor.lintian-overrides
=====================================
@@ -0,0 +1,3 @@
+# Silence lintian about fonts
+python3-emperor: font-in-non-font-package
+python3-emperor: font-outside-font-dir


=====================================
debian/rules
=====================================
@@ -29,12 +29,14 @@ override_dh_installdocs:
 	fi
 
 override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	if [ ! -d tests/javascript_tests/qunit/ ]; then \
 		mkdir tests/javascript_tests/qunit ; \
 		cd tests/javascript_tests/qunit/ && ln -s /usr/share/javascript/qunit/qunit.css qunit-min.css \
 		                                 && ln -s /usr/share/javascript/qunit/qunit.min.js qunit-min.js ; \
 	fi
 	PYTHONPATH=.pybuild/`find .pybuild -name cpython3*_emperor -type d|head -n 1`/build pytest-3
+endif
 
 override_dh_auto_clean:
 	dh_auto_clean


=====================================
debian/salsa-ci.yml
=====================================
@@ -5,3 +5,5 @@ include:
 
 variables:
   SALSA_CI_DISABLE_BUILD_PACKAGE_I386: 'true'
+  # Build against scipy 1.10 in experimental
+  RELEASE: 'experimental'



View it on GitLab: https://salsa.debian.org/med-team/emperor/-/compare/f6864cb5a9d96b8863af1083efe19ab4d14f45f1...5333833f899a3621482aede047a1f3daedb11e81

-- 
View it on GitLab: https://salsa.debian.org/med-team/emperor/-/compare/f6864cb5a9d96b8863af1083efe19ab4d14f45f1...5333833f899a3621482aede047a1f3daedb11e81
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230126/afa6f294/attachment-0001.htm>