[med-svn] [Git][med-team/q2-metadata][master] 8 commits: Adopt patch from upstream which needs a Dependency from q2-quality-filter

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / q2-metadata


Commits:
cc5fb8e2 by Andreas Tille at 2023-01-26T16:28:11+01:00
Adopt patch from upstream which needs a Dependency from q2-quality-filter

- - - - -
4cb0bf5f by Andreas Tille at 2023-01-26T16:34:06+01:00
Build against scipy >= 1.9 and skbio in experimental

- - - - -
47e010ef by Andreas Tille at 2023-01-26T16:38:17+01:00
Patch seems to be unneeded - we just need the correct Dependencies in d/control

- - - - -
9522e477 by Andreas Tille at 2023-01-26T16:51:30+01:00
Advertise repackaged source in tarball name

- - - - -
bf67b405 by Andreas Tille at 2023-01-26T16:52:49+01:00
New upstream version 2022.11.1+dfsg
- - - - -
c821f952 by Andreas Tille at 2023-01-26T16:52:49+01:00
Update upstream source from tag 'upstream/2022.11.1+dfsg'

Update to upstream version '2022.11.1+dfsg'
with Debian dir f80ed378258738fd00db4cb09c508a888eeff0b1
- - - - -
9094c1a3 by Andreas Tille at 2023-01-26T16:59:45+01:00
Drop unused lintian-overrides

- - - - -
6d2c9878 by Andreas Tille at 2023-01-26T17:02:59+01:00
Upload to experimental

- - - - -


5 changed files:

- debian/changelog
- debian/control
- − debian/lintian-overrides
- debian/watch
- q2_metadata/_version.py


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,4 @@
-q2-metadata (2022.11.1-2) UNRELEASED; urgency=medium
-
-  TODO: Test suite failure reported upstream
-      https://github.com/qiime2/q2-metadata/issues/55
-
- -- Andreas Tille <tille at debian.org>  Wed, 25 Jan 2023 17:23:07 +0100
-
-q2-metadata (2022.11.1-1) unstable; urgency=medium
+q2-metadata (2022.11.1+dfsg-0exp1) experimental; urgency=medium
 
   * Team upload.
   * New upstream version
@@ -13,6 +6,12 @@ q2-metadata (2022.11.1-1) unstable; urgency=medium
   * Standards-Version: 4.6.2 (routine-update)
   * Mark build time test as always true since registration to qiime can
     only be done at autopkgtest time
+  * Adopt patch from upstream which needs a Dependency from
+    q2-quality-filter
+  * Build against scipy >= 1.9 and skbio in experimental
+    Closes: #1029699
+  * Advertise repackaged source in tarball name
+  * Drop unused lintian-overrides
 
  -- Andreas Tille <tille at debian.org>  Sat, 14 Jan 2023 16:45:39 +0100
 


=====================================
debian/control
=====================================
@@ -11,10 +11,11 @@ Build-Depends: debhelper-compat (= 13),
                python3-setuptools,
                python3-pytest-cov,
                python3-pandas,
-               python3-skbio,
+               python3-skbio (>= 0.5.8-2exp1~),
                libjs-jquery-datatables,
                qiime (>= 2022.11.1),
                q2templates (>= 2022.11.1),
+               q2-quality-filter (>= 2022.11.1),
                q2-types (>= 2022.11.1)
 Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/q2-metadata
@@ -28,12 +29,13 @@ Depends: ${shlibs:Depends},
          ${misc:Depends},
          ${python3:Depends},
          python3-numpy,
-         python3-scipy,
+         python3-scipy (>= 1.9),
          python3-pandas,
-         python3-skbio,
+         python3-skbio (>= 0.5.8-2exp1~),
          libjs-jquery-datatables,
          qiime (>= 2022.11.1),
          q2templates (>= 2022.11.1),
+         q2-quality-filter (>= 2022.11.1),
          q2-types (>= 2022.11.1)
 Description: QIIME 2 plugin for working with and visualizing Metadata
  QIIME 2 is a powerful, extensible, and decentralized microbiome analysis


=====================================
debian/lintian-overrides deleted
=====================================
@@ -1,2 +0,0 @@
-# Until minified javascript becomes architecture dependent, this should be ok:
-q2-metadata: breakout-link usr/*.min.js


=====================================
debian/watch
=====================================
@@ -1,4 +1,4 @@
 version=4
-opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
+opts="repacksuffix=+dfsg,dversionmangle=auto,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE at -$1.tar.gz%" \
 	https://github.com/qiime2/q2-metadata/tags \
 	(?:.*?/)?v?(\d[\d.]*)\.tar\.gz debian uupdate


=====================================
q2_metadata/_version.py
=====================================
@@ -23,7 +23,7 @@ def get_keywords():
     # setup.py/versioneer.py will grep for the variable names, so they must
     # each be defined on a line of their own. _version.py will just call
     # get_keywords().
-    git_refnames = " (HEAD -> master, tag: 2022.11.1)"
+    git_refnames = " (tag: 2022.11.1)"
     git_full = "3fb78377c3aa05380d57e101e6146fb4099ea437"
     git_date = "2022-12-21 22:06:24 +0000"
     keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}



View it on GitLab: https://salsa.debian.org/med-team/q2-metadata/-/compare/42e9ec277218d938bd90d0a14540fa3d9554cf94...6d2c9878a6d49e1592eb17561cbe90984cc2d964

-- 
View it on GitLab: https://salsa.debian.org/med-team/q2-metadata/-/compare/42e9ec277218d938bd90d0a14540fa3d9554cf94...6d2c9878a6d49e1592eb17561cbe90984cc2d964
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