[med-svn] [Git][med-team/diamond-aligner][upstream] New upstream version 2.1.8

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / diamond-aligner


Commits:
189bfac9 by Andreas Tille at 2023-07-11T17:22:29+02:00
New upstream version 2.1.8
- - - - -


30 changed files:

- .gitignore
- CMakeLists.txt
- Dockerfile
- README.md
- src/ChangeLog
- src/align/align.cpp
- src/align/extend.cpp
- src/align/extend_chunk.h
- src/align/gapped_filter.cpp
- src/align/gapped_score.cpp
- src/align/global_ranking/extend.cpp
- src/align/global_ranking/table.cpp
- src/align/legacy/banded_swipe_pipeline.cpp
- src/align/legacy/query_mapper.cpp
- src/align/output.cpp
- src/align/ungapped.cpp
- src/basic/basic.cpp
- src/basic/config.cpp
- src/basic/config.h
- src/basic/const.h
- src/basic/hssp.cpp
- src/basic/match.h
- src/basic/packed_loc.h
- src/basic/seed_iterator.h
- src/basic/value.h
- src/chaining/greedy_align.cpp
- src/cluster/cascaded/cascaded.cpp
- src/cluster/cascaded/recluster.cpp
- src/cluster/cascaded/wrapper.cpp
- src/cluster/cluster_registry.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/commit/189bfac99f15903e6e414908112905fb79b68712

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