Andreas Tille pushed to branch master at Debian Med / gubbins
Commits:
9b9badd2 by Andreas Tille at 2023-07-12T21:21:08+02:00
Build-Depends: tox and do not override dh_auto_test
- - - - -
c6b8c30c by Andreas Tille at 2023-07-12T21:23:49+02:00
Test-Depends / Recommends: python3-numba
- - - - -
4 changed files:
- debian/changelog
- debian/control
- debian/rules
- debian/tests/control
Changes:
=====================================
debian/changelog
=====================================
@@ -5,6 +5,8 @@ gubbins (3.3-1) UNRELEASED; urgency=medium
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse.
* Build-Depends: autoconf-archive
* autoupdate to avoid warnings from configure.ac
+ * Build-Depends: tox and do not override dh_auto_test
+ * Test-Depends / Recommends: python3-numba
-- Andreas Tille <tille at debian.org> Tue, 07 Feb 2023 10:04:38 +0100
=====================================
debian/control
=====================================
@@ -18,7 +18,7 @@ Build-Depends: debhelper-compat (= 13),
python3-biopython,
python3-dendropy,
python3-reportlab,
- python3-pytest,
+ tox <!nocheck>,
python3-scipy <!nocheck>,
python3-multiprocess <!nocheck>,
python3-wheel <!nocheck>
@@ -36,7 +36,8 @@ Depends: ${shlibs:Depends},
python3,
raxml
Recommends: iqtree,
- fasttree
+ fasttree,
+ python3-numba
Description: phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
=====================================
debian/rules
=====================================
@@ -19,13 +19,6 @@ override_dh_auto_install:
cd python && \
python3 setup.py install --root=../debian/gubbins --install-layout=deb --install-lib=/usr/share/gubbins --install-scripts=/usr/share/gubbins
-override_dh_auto_test:
-ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
- dh_auto_test
- cd python && \
- PATH="$$PATH:../src" python3 setup.py test
-endif
-
override_dh_install:
dh_install
find debian -name "*.la" -delete
=====================================
debian/tests/control
=====================================
@@ -1,3 +1,4 @@
Tests: run-example
-Depends: @
+Depends: @,
+ python3-numba
Restrictions: allow-stderr
View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/a579c2b65dd84fef037f699ddf70b1b6dee32607...c6b8c30ca01f72a149a8f694d4fb6fcca486318a
--
View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/a579c2b65dd84fef037f699ddf70b1b6dee32607...c6b8c30ca01f72a149a8f694d4fb6fcca486318a
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230712/ee34521d/attachment-0001.htm>