[med-svn] [Git][med-team/toil][master] 2 commits: d/rules: skip the WDL tests (not packaged)

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
0376d9b8 by Michael R. Crusoe at 2023-07-14T13:40:23+02:00
d/rules: skip the WDL tests (not packaged)

- - - - -
09985de7 by Michael R. Crusoe at 2023-07-14T13:50:20+02:00
d/patches/setting_version.patch: update for Toil 5.11.0

- - - - -


3 changed files:

- debian/changelog
- debian/patches/setting_version.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,10 +1,15 @@
 toil (5.11.0-1) UNRELEASED; urgency=medium
 
+  [ Andreas Tille ]
   * Team upload.
   * New upstream version
   * Build-Depends: python3-sphinx-autoapi, python3-sphinx-autodoc-typehints,
                    python3-sphinxcontrib.autoprogram, docker.io
 
+  [ Michael R. Crusoe ]
+  * d/rules: skip the WDL tests (not packaged)
+  * d/patches/setting_version.patch: update for Toil 5.11.0
+
  -- Andreas Tille <tille at debian.org>  Thu, 13 Jul 2023 15:37:33 +0200
 
 toil (5.9.2-2) unstable; urgency=medium


=====================================
debian/patches/setting_version.patch
=====================================
@@ -10,17 +10,19 @@ source to the tag corresponding to the release
 As of Toil 5.7.0 the `cwltool_version` field is set in requirements-cwl.txt, please
 copy/update that field manually
 --- /dev/null
-+++ b/src/toil/version.py
-@@ -0,0 +1,12 @@
-+baseVersion = '5.9.0'
++++ toil/src/toil/version.py
+@@ -0,0 +1,13 @@
++baseVersion = '3.11.0'
 +cgcloudVersion = '1.6.0a1.dev393'
-+version = '5.9.0-8155e0a981f4d728762a7cbc920b7ed544fe4ae7'
-+distVersion = '5.9.0'
-+exactPython = 'python3'
-+python = 'python3'
-+dockerTag = '5.9.0-8155e0a981f4d728762a7cbc920b7ed544fe4ae7-py3.9'
-+currentCommit = '8155e0a981f4d728762a7cbc920b7ed544fe4ae7'
++version = '3.11.0-ca24899f31a2d7f8b3f766a1c99c982ccf1044eb'
++shortVersion = '3.11.0-ca24899'
++distVersion = '3.11.0'
++dockerTag = '3.11.0-ca24899f31a2d7f8b3f766a1c99c982ccf1044eb'
++dockerShortTag = '3.11.0-ca24899'
++dockerMinimalTag = '3.11.0'
 +dockerRegistry = 'quay.io/ucsc_cgl'
 +dockerName = 'toil'
++buildNumber = None
++currentCommit = 'ca24899f31a2d7f8b3f766a1c99c982ccf1044eb'
 +dirty = False
-+cwltool_version = '3.1.20221201130942'
++cwltool_version = '3.1.20230425144158'


=====================================
debian/rules
=====================================
@@ -23,7 +23,7 @@ override_dh_auto_install:
 override_dh_auto_test:
 ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	PYBUILD_SYSTEM=custom \
-		PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py develop --user && PYTHONPATH={dir}/src:$$PYTHONPATH PATH={home_dir}/.local/bin/:$$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True {interpreter} -m pytest -n auto --dist loadscope -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py --ignore src/toil/test/lib/aws/test_iam.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest or test_cwl_toil_kill or testImportReadFileCompatibility or CleanWorkDirTest or DeferredFunctionTest)" {dir}/src/toil/test' \
+		PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py develop --user && PYTHONPATH={dir}/src:$$PYTHONPATH PATH={home_dir}/.local/bin/:$$PATH TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True {interpreter} -m pytest -n auto --dist loadscope -vv -W ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py --ignore src/toil/test/src/promisedRequirementTest.py --ignore src/toil/test/lib/test_ec2.py --ignore src/toil/test/batchSystems/batchSystemTest.py --ignore src/toil/test/lib/aws/test_iam.py -k "not (test_bioconda or test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest or test_cwl_toil_kill or testImportReadFileCompatibility or CleanWorkDirTest or DeferredFunctionTest or WdlToilTest)" {dir}/src/toil/test' \
 		dh_auto_test
 endif
 



View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/21e98c36f6952466dc4107d37293afa06472f62d...09985de7d95ecdc819e8a473a8d4f639554de7bd

-- 
View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/21e98c36f6952466dc4107d37293afa06472f62d...09985de7d95ecdc819e8a473a8d4f639554de7bd
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