[med-svn] [Git][med-team/kmc][master] 15 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / kmc


Commits:
138139b6 by Étienne Mollier at 2023-07-17T10:22:14+02:00
routine-update: New upstream version

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b2aeea28 by Étienne Mollier at 2023-07-17T10:22:15+02:00
New upstream version 3.2.2+dfsg
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6358df74 by Étienne Mollier at 2023-07-17T10:22:16+02:00
Update upstream source from tag 'upstream/3.2.2+dfsg'

Update to upstream version '3.2.2+dfsg'
with Debian dir 8fff6d5c6d6eb16c8bdd5ae7b8c12c5e8d050398
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76c28005 by Étienne Mollier at 2023-07-17T10:22:16+02:00
routine-update: Standards-Version: 4.6.2

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73a8656f by Étienne Mollier at 2023-07-17T10:22:31+02:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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17626d22 by Étienne Mollier at 2023-07-17T10:32:50+02:00
use-shared-libs patch: refresh; forward not-needed.

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e84c68c1 by Étienne Mollier at 2023-07-17T10:44:12+02:00
makefile.patch: refresh; forwarding not-needed.

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68444b46 by Étienne Mollier at 2023-07-17T10:46:31+02:00
0005-Add-static-library-target-to-makefile.patch: refresh.

Also, forwarding is deemed not-needed for this yet-another Makefile
change.

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b85413ca by Étienne Mollier at 2023-07-17T10:47:29+02:00
disable-python-bindings.patch: refresh.

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a73564a9 by Étienne Mollier at 2023-07-17T11:04:26+02:00
makefile.patch: fixup.

We want CXXFLAGS to include -fsigned-char to spare ourselves some
char related patches.

Gbp-Dch: ignore

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633c229a by Étienne Mollier at 2023-07-17T11:05:30+02:00
simde patch: refresh.

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a505a826 by Étienne Mollier at 2023-07-17T11:05:40+02:00
support-mixed-march.patch: refresh.

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0429b35f by Étienne Mollier at 2023-07-17T11:14:00+02:00
simde patch: fix missing endif.

Gbp-Dch: ignore

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b258550a by Étienne Mollier at 2023-07-17T11:18:13+02:00
remove last occurrence to 3rd_party in Makefile.

This change is yet another fixup to makefile.patch, which also
restores 0005-Add-static-library-target-to-makefile.patch in its
original state.

Gbp-Dch: ignore

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b80a4bb1 by Étienne Mollier at 2023-07-17T11:21:05+02:00
update changelog

Note that the new kmc version is still affected by #1037708.

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30 changed files:

- .github/workflows/main.yml
- + .github/workflows/self-hosted.yml
- .gitignore
- + .gitmodules
- Makefile
- README.md
- + build_release.py
- debian/changelog
- debian/control
- debian/patches/0005-Add-static-library-target-to-makefile.patch
- debian/patches/disable-python-bindings.patch
- debian/patches/makefile.patch
- debian/patches/simde
- debian/patches/support-mixed-march.patch
- debian/patches/use-shared-libs
- kmc.sln
- kmc_CLI/kmc_CLI.vcxproj
- kmc_api/kmc_file.cpp
- kmc_api/kmc_file.h
- kmc_api/kmer_api.cpp
- kmc_api/kmer_api.h
- kmc_api/kmer_defs.h
- kmc_api/mmer.cpp
- kmc_api/mmer.h
- kmc_core/bam_utils.h
- kmc_core/binary_reader.h
- kmc_core/bkb_merger.h
- kmc_core/bkb_reader.cpp
- kmc_core/bkb_reader.h
- kmc_core/bkb_sorter.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/kmc/-/compare/d153f3baf218eb1ac65332cf82ec0071b9b939d7...b80a4bb1aad615cdd24477a1e50df34c65c816ad

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View it on GitLab: https://salsa.debian.org/med-team/kmc/-/compare/d153f3baf218eb1ac65332cf82ec0071b9b939d7...b80a4bb1aad615cdd24477a1e50df34c65c816ad
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