[med-svn] [Git][med-team/ivar][master] 13 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / ivar


Commits:
03db8d45 by Étienne Mollier at 2023-07-20T14:26:48+02:00
routine-update: New upstream version

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1201d397 by Étienne Mollier at 2023-07-20T15:22:09+02:00
New upstream version 1.4.2+dfsg
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94054133 by Étienne Mollier at 2023-07-20T15:22:10+02:00
routine-update: Standards-Version: 4.6.2

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cfc14ca1 by Étienne Mollier at 2023-07-20T15:22:10+02:00
Fix-warning.patch: refresh.

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89327666 by Étienne Mollier at 2023-07-20T15:22:10+02:00
forward-build-options.patch: refresh.

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e20dec8a by Étienne Mollier at 2023-07-20T15:22:10+02:00
gcc-11.patch: remove: upstream diverged.

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f911661c by Étienne Mollier at 2023-07-20T15:22:10+02:00
privacy-breach.patch: refresh.

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5efaee6e by Étienne Mollier at 2023-07-20T15:22:10+02:00
gcc-12.patch: delete: applied upstream.

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618b62c2 by Étienne Mollier at 2023-07-20T15:22:11+02:00
gcc-11_2.patch: remove: now unneeded.

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516c261c by Étienne Mollier at 2023-07-20T15:22:11+02:00
gcc-13.patch: add: fix ftbfs with gcc-13.

Closes: #1037700

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78ceb875 by Étienne Mollier at 2023-07-20T15:22:11+02:00
d/rules: remove executable bit from test data file.

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546e99e1 by Étienne Mollier at 2023-07-20T15:22:18+02:00
d/t/ref/*: refresh reference outputs for autopkgtests.

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865bc335 by Étienne Mollier at 2023-07-20T15:22:56+02:00
ready to upload to unstable

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30 changed files:

- + .clang-format
- Doxyfile
- configure.ac
- + data/primer_pair_test/test_primer_pair.bed
- + data/primer_pair_test/test_primer_pair_trim.tsv
- + data/primer_pair_test/test_primer_pair_trim.untrimmed.bam
- data/test.gff
- debian/changelog
- debian/control
- debian/patches/Fix-warning.patch
- debian/patches/forward-build-options.patch
- − debian/patches/gcc-11.patch
- − debian/patches/gcc-11_2.patch
- − debian/patches/gcc-12.patch
- + debian/patches/gcc-13.patch
- debian/patches/privacy-breach.patch
- debian/patches/series
- debian/rules
- debian/tests/ref/out-removereads.sam
- debian/tests/ref/out-trim.sam
- debian/tests/ref/out-variants.tsv
- docs/MANUAL.md
- + docs/html/bc_sd.png
- docs/html/cookbookpage.html
- + docs/html/dir_49e56c817e5e54854c35e136979f97ca.html
- + docs/html/docd.png
- + docs/html/doxygen.svg
- docs/html/dynsections.js
- docs/html/index.html
- docs/html/installpage.html


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/5ec52abb2c234d75caa9bb3f82f73e651130676d...865bc335e1ae6b422215790360b1a7e98fd11545

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View it on GitLab: https://salsa.debian.org/med-team/ivar/-/compare/5ec52abb2c234d75caa9bb3f82f73e651130676d...865bc335e1ae6b422215790360b1a7e98fd11545
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