[med-svn] [Git][med-team/python-deeptools][master] 10 commits: routine-update: New upstream version

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-deeptools


Commits:
113d781f by Étienne Mollier at 2023-06-17T10:47:12+02:00
routine-update: New upstream version

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95354d03 by Étienne Mollier at 2023-06-17T10:47:13+02:00
New upstream version 3.5.2
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cedf247f by Étienne Mollier at 2023-06-17T10:47:24+02:00
Update upstream source from tag 'upstream/3.5.2'

Update to upstream version '3.5.2'
with Debian dir 480014def55b7be02b65c4f0424dd3c7f3676b5d
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fff3cf6f by Étienne Mollier at 2023-06-17T10:55:24+02:00
d/control: cleanup obsolete package versions.

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822dbe79 by Étienne Mollier at 2023-06-17T10:56:19+02:00
numpy-1.24.patch: refresh.

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6b75e79a by Étienne Mollier at 2023-06-17T10:57:06+02:00
pytest.patch: unfuzz.

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5a88cc56 by Étienne Mollier at 2023-06-17T10:57:25+02:00
python2to3_for_executables.patch: unfuzz.

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cb3568aa by Étienne Mollier at 2023-06-17T11:07:39+02:00
python2to3_for_executables.patch: update.

Adjust also newly introduced files.

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9a8f573c by Étienne Mollier at 2023-06-17T11:16:44+02:00
d/s/lintian-overrides: remove.

The source-missing flag was not raised as the affected files are
already excluded.

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9e5c0dc8 by Étienne Mollier at 2023-06-17T11:19:59+02:00
ready to upload to unstable

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30 changed files:

- − .azure-pipelines/test-template.yml
- + .github/workflows/planemo.yml
- .github/workflows/pypi.yml
- .github/workflows/test.yml
- .gitignore
- .planemo.sh
- CHANGES.txt
- README.md
- − azure-pipelines.yml
- + bin/bigwigAverage
- bin/estimateScaleFactor
- debian/changelog
- debian/control
- debian/patches/numpy-1.24.patch
- debian/patches/pytest.patch
- debian/patches/python2to3_for_executables.patch
- − debian/source/lintian-overrides
- deeptools/SES_scaleFactor.py
- deeptools/_version.py
- deeptools/alignmentSieve.py
- deeptools/bamHandler.py
- + deeptools/bigwigAverage.py
- deeptools/bigwigCompare.py
- deeptools/computeGCBias.py
- deeptools/computeMatrix.py
- deeptools/correctGCBias.py
- deeptools/correlation.py
- deeptools/countReadsPerBin.py
- deeptools/deepBlue.py
- deeptools/deeptools_list_tools.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-deeptools/-/compare/47c53ade6ca08a73bf2a306ba250fb1baf7bf653...9e5c0dc8ace05cd83176d7f3d6675f22124005c5

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-deeptools/-/compare/47c53ade6ca08a73bf2a306ba250fb1baf7bf653...9e5c0dc8ace05cd83176d7f3d6675f22124005c5
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