[med-svn] [Git][med-team/augustus][master] enable building with GCC 13

[Sascha Steinbiss (@satta)]

Sascha Steinbiss pushed to branch master at Debian Med / augustus


Commits:
49f81775 by Sascha Steinbiss at 2023-06-17T18:35:07+02:00
enable building with GCC 13

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/cstdint.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+augustus (3.5.0+dfsg-3) unstable; urgency=medium
+
+  * Add patch to fix building with GCC 13.
+    Addresses: #1037821
+
+ -- Sascha Steinbiss <satta at debian.org>  Sat, 17 Jun 2023 18:33:10 +0200
+
 augustus (3.5.0+dfsg-2) unstable; urgency=medium
 
   * Skip filterBam auxprogs test on s390x.


=====================================
debian/patches/cstdint.patch
=====================================
@@ -0,0 +1,24 @@
+Description: enable building with GCC 13
+Author: Sascha Steinbiss <satta at debian.org>
+Forwarded: https://github.com/Gaius-Augustus/Augustus/pull/395
+Last-Update: 2023-06-17
+--- a/auxprogs/homGeneMapping/include/sqliteDB.hh
++++ b/auxprogs/homGeneMapping/include/sqliteDB.hh
+@@ -13,6 +13,7 @@
+ #include <string>
+ #include <vector>
+ #include <sqlite3.h>
++#include <cstdint>
+ 
+ using namespace std;
+ 
+--- a/include/sqliteDB.hh
++++ b/include/sqliteDB.hh
+@@ -11,6 +11,7 @@
+ #include <string>
+ #include <vector>
+ #include <sqlite3.h>
++#include <cstdint>
+ 
+ using namespace std;
+ 


=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ interpreter_paths.patch
 switch_cgp_testing_off.patch
 disable-compare.patch
 s390x-disable-filterbam-tests.patch
+cstdint.patch



View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/49f81775abe3dc4c34557bf1384209f8405e27df

-- 
View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/49f81775abe3dc4c34557bf1384209f8405e27df
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