[med-svn] [Git][med-team/pbseqlib][master] 5 commits: Annotate gtest with <!nocheck>

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / pbseqlib


Commits:
1a1454ee by Nilesh Patra at 2023-06-20T23:42:05+05:30
Annotate gtest with <!nocheck>

- - - - -
da88ef75 by Nilesh Patra at 2023-06-20T23:44:14+05:30
Add patch to fix FTBFS with gcc-13 (Closes: #1037815)

- - - - -
46b2343d by Nilesh Patra at 2023-06-20T23:45:31+05:30
Disable salsa-CI for i386 due to pbbam not being available on 32 bit archs

- - - - -
09f79391 by Nilesh Patra at 2023-06-21T01:06:14+05:30
Mark libpbihdf-dev as MA: same

- - - - -
f5f7baac by Nilesh Patra at 2023-06-21T01:06:14+05:30
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/gcc-13.patch
- debian/patches/series
- debian/salsa-ci.yml


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+pbseqlib (5.3.5+dfsg-5) unstable; urgency=medium
+
+  * Team upload.
+  * Annotate gtest with <!nocheck>
+  * Add patch to fix FTBFS with gcc-13 (Closes: #1037815)
+  * Disable salsa-CI for i386 due to pbbam not being available on 32 bit archs
+  * Mark libpbihdf-dev as MA: same
+
+ -- Nilesh Patra <nilesh at debian.org>  Tue, 20 Jun 2023 23:44:20 +0530
+
 pbseqlib (5.3.5+dfsg-4) unstable; urgency=medium
 
   * Switch watch file to tags


=====================================
debian/control
=====================================
@@ -8,15 +8,14 @@ Build-Depends: debhelper-compat (= 13),
                meson,
                pkg-config,
                cmake,
-               googletest,
-               libgtest-dev,
+               googletest <!nocheck>,
+               libgtest-dev <!nocheck>,
                zlib1g-dev,
                libhdf5-dev,
                libboost-dev,
                libpbbam-dev,
                libpbcopper-dev,
                libhts-dev,
-               libgtest-dev <!nocheck>
 Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/pbseqlib
 Vcs-Git: https://salsa.debian.org/med-team/pbseqlib.git
@@ -96,6 +95,7 @@ Description: tools for handling PacBio sequences (development files)
 
 Package: libpbihdf-dev
 Architecture: any
+Multi-Arch: same
 Section: libdevel
 Depends: libhdf5-dev,
          ${misc:Depends}


=====================================
debian/patches/gcc-13.patch
=====================================
@@ -0,0 +1,14 @@
+Description: Include cstdint to fix ftbfs with gcc-13
+Author: Nilesh Patra <nilesh at riseup.net>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037815
+Last-Update: 2023-06-20
+--- a/pbdata/utils.hpp
++++ b/pbdata/utils.hpp
+@@ -5,6 +5,7 @@
+ #include <fstream>
+ #include <iostream>
+ #include <string>
++#include <cstdint>
+ 
+ template <typename t_file>
+ void CrucialOpen(std::string& fileName, t_file& file,


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ hdf5-1.10.1-support.patch
 hdf5-1.10.0-support.patch
 meson.patch
 static+shared_lib.patch
+gcc-13.patch


=====================================
debian/salsa-ci.yml
=====================================
@@ -2,3 +2,7 @@
 include:
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+
+#i386 CI disabled due to unavailable libpb*-dev for i386 architecture
+variables:
+  SALSA_CI_DISABLE_BUILD_PACKAGE_I386: "true"



View it on GitLab: https://salsa.debian.org/med-team/pbseqlib/-/compare/e1231bfdc2f625bd861b1286d6ec0d5957cf930d...f5f7baac654c5446799a9de2c52d36351b925e0e

-- 
View it on GitLab: https://salsa.debian.org/med-team/pbseqlib/-/compare/e1231bfdc2f625bd861b1286d6ec0d5957cf930d...f5f7baac654c5446799a9de2c52d36351b925e0e
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