[med-svn] [Git][med-team/salmon][master] Remove fmd test as this is not supported in this version of salon

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / salmon


Commits:
378b543e by Nilesh Patra at 2023-03-12T18:06:24+00:00
Remove fmd test as this is not supported in this version of salon

- - - - -


1 changed file:

- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/run-unit-test
=====================================
@@ -14,8 +14,6 @@ cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
 cd "${AUTOPKGTEST_TMP}"
 
 set -x
-salmon index -t transcripts.fasta -i sample_salmon_quasi_index
 
-salmon quant -i sample_salmon_fmd_index -l IU -1 reads_1.fastq -2 reads_2.fastq -o sample_salmon_fmd_quant
+salmon index -t transcripts.fasta -i sample_salmon_quasi_index
 salmon quant -i sample_salmon_quasi_index -l IU -1 reads_1.fastq -2 reads_2.fastq -o sample_salmon_quasi_quant
-#/usr/lib/salmon/sailfish --no-version-check quant -i sample_index --noBiasCorrect -l IU -1 reads_1.fastq -2 reads_2.fastq -o sample_quant



View it on GitLab: https://salsa.debian.org/med-team/salmon/-/commit/378b543e4724819853a439bc07c9a840f1485307

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View it on GitLab: https://salsa.debian.org/med-team/salmon/-/commit/378b543e4724819853a439bc07c9a840f1485307
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