[med-svn] [Git][med-team/salmon][master] 2 commits: Confirm same finding as Nilesh in his latest commit and finalise test

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / salmon


Commits:
d65b28ef by Andreas Tille at 2023-03-13T09:14:50+01:00
Confirm same finding as Nilesh in his latest commit and finalise test

- - - - -
ecf5dfcb by Andreas Tille at 2023-03-13T09:22:48+01:00
Upload to unstable

- - - - -


2 changed files:

- debian/changelog
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-salmon (1.10.1+ds1-1) UNRELEASED; urgency=medium
+salmon (1.10.1+ds1-1) unstable; urgency=medium
 
   * Team upload.
   * New upstream version
@@ -6,7 +6,7 @@ salmon (1.10.1+ds1-1) UNRELEASED; urgency=medium
   * Refresh external files from pufferfish
   * Add autopkgtest
 
- -- Andreas Tille <tille at debian.org>  Sun, 12 Mar 2023 15:32:15 +0100
+ -- Andreas Tille <tille at debian.org>  Mon, 13 Mar 2023 09:15:13 +0100
 
 salmon (1.9.0+ds1-1) unstable; urgency=medium
 


=====================================
debian/tests/run-unit-test
=====================================
@@ -6,14 +6,16 @@ pkg=salmon
 export LC_ALL=C.UTF-8
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  # trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
 cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
 
-set -x
-
 salmon index -t transcripts.fasta -i sample_salmon_quasi_index
 salmon quant -i sample_salmon_quasi_index -l IU -1 reads_1.fastq -2 reads_2.fastq -o sample_salmon_quasi_quant
+
+if [ -e sample_salmon_quasi_quant/quant.sf ] ; then
+    echo "Test passed"
+fi



View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/378b543e4724819853a439bc07c9a840f1485307...ecf5dfcb8a904b476b5f7e8169e63f80c22a73f6

-- 
View it on GitLab: https://salsa.debian.org/med-team/salmon/-/compare/378b543e4724819853a439bc07c9a840f1485307...ecf5dfcb8a904b476b5f7e8169e63f80c22a73f6
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