[med-svn] [Git][med-team/kleborate][master] 2 commits: d/{rules, *.prerm}: cleanup .fasta.{ndb, ntf} files

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / kleborate


Commits:
ac419a5d by Étienne Mollier at 2023-05-25T11:51:27+02:00
d/{rules,*.prerm}: cleanup .fasta.{ndb,ntf} files

kleborate binary package  used to embed autogenerated files depending
on makeblastdb version at both build time and postinst time.  When
there is a discrepancy of makeblastdb version between the package
build and the package installation, for instance during a major
operating system upgrade, there can be a mismatch of int the
.fasta.ndb and .fasta.ntf files produced and expected.  This change
gets rid of the build time artifacts to solely rely on the
post-installation artifacts, which will be more consistent and won't
break the package consistency.

Closes: #1036743

- - - - -
1559bcd3 by Étienne Mollier at 2023-05-25T14:48:35+02:00
ready to upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/kleborate.prerm
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+kleborate (2.3.1-2) unstable; urgency=medium
+
+  * d/{rules,*.prerm}: cleanup .fasta.{ndb,ntf} files
+    kleborate binary package  used to embed autogenerated files depending
+    on makeblastdb version at both build time and postinst time.  When
+    there is a discrepancy of makeblastdb version between the package
+    build and the package installation, for instance during a major
+    operating system upgrade, there can be a mismatch of int the
+    .fasta.ndb and .fasta.ntf files produced and expected.  This change
+    gets rid of the build time artifacts to solely rely on the
+    post-installation artifacts, which will be more consistent and won't
+    break the package consistency. (Closes: #1036743)
+
+ -- Étienne Mollier <emollier at debian.org>  Thu, 25 May 2023 14:48:18 +0200
+
 kleborate (2.3.1-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/kleborate.prerm
=====================================
@@ -5,6 +5,8 @@ set -e
 case "$1" in
     remove|purge|upgrade|deconfigure)
 	rm -f /usr/lib/python3/dist-packages/kleborate/data/*.fasta.nin
+	rm -f /usr/lib/python3/dist-packages/kleborate/data/*.fasta.ndb
+	rm -f /usr/lib/python3/dist-packages/kleborate/data/*.fasta.ntf
     ;;
     failed-upgrade)
     ;;


=====================================
debian/rules
=====================================
@@ -7,8 +7,14 @@ export LC_ALL=C
 
 override_dh_install:
 	dh_install
-	# fasta.nin files will be (re)build at package installation time to not contain build path
+	# fasta.nin files will be (re)build at package installation time to not
+	# contain build path.  Other fasta.* are rebuilt by makeblastdb and may
+	# cause inconsistencies in the package itself when makeblastdb is
+	# upgraded and changes format, e.g. during a major operating system
+	# upgrade.  See Bug#1036743.
 	find debian -name "*.fasta.nin" -delete
+	find debian -name "*.fasta.ndb" -delete
+	find debian -name "*.fasta.ntf" -delete
 
 override_dh_fixperms:
 	dh_fixperms



View it on GitLab: https://salsa.debian.org/med-team/kleborate/-/compare/2df0e4a4644e734bbf7f5304d29bdba482ceda1c...1559bcd3f7314029ee6d8b879de665b1416ae474

-- 
View it on GitLab: https://salsa.debian.org/med-team/kleborate/-/compare/2df0e4a4644e734bbf7f5304d29bdba482ceda1c...1559bcd3f7314029ee6d8b879de665b1416ae474
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