[med-svn] [Git][med-team/snakemake][main] 2 commits: add python3-packaging

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch main at Debian Med / snakemake


Commits:
03deaa92 by Rebecca N. Palmer at 2023-11-12T13:24:02+00:00
add python3-packaging

- - - - -
80b1aa4e by Rebecca N. Palmer at 2023-11-12T13:27:33+00:00
fix syntax error

- - - - -


2 changed files:

- debian/control
- debian/patches/remove_ccbysa_snippets.patch


Changes:

=====================================
debian/control
=====================================
@@ -25,6 +25,7 @@ Build-Depends: ca-certificates,
                python3-jinja2 (>= 3.0~),
                python3-jsonschema,
                python3-nbformat,
+               python3-packaging,
                python3-pandas <!nocheck>,
                python3-pkg-resources,
                python3-psutil,
@@ -51,6 +52,7 @@ Build-Depends: ca-certificates,
                python3-toposort <!nocheck>,
                python3-wrapt,
                python3-yaml,
+#               python3-yte (>= 1.5.1~) <!nocheck>,
                r-cran-rmarkdown,
                stress <!nocheck>
 Standards-Version: 4.6.2
@@ -79,6 +81,7 @@ Depends: ${misc:Depends},
          python3-toposort,
          python3-wrapt,
          python3-yaml,
+#         python3-yte (>= 1.5.1~),
          libjs-bootstrap,
          libjs-jquery,
 Recommends: cwltool,
@@ -88,7 +91,6 @@ Recommends: cwltool,
 # for the templating and reports features
             python3-jinja2 (>= 3.0~),
             python3-pygments,
-# we don't have python3-yte (>= 1.0~)
 # for distributed / cloud setups or online data access
             python3-azure-storage,
             python3-biopython,
@@ -100,6 +102,7 @@ Recommends: cwltool,
             python3-ftputil,
             python3-irodsclient,
             python3-kubernetes,
+            python3-packaging,
             python3-retry,
             python3-urllib3
 Suggests: slurm-client,


=====================================
debian/patches/remove_ccbysa_snippets.patch
=====================================
@@ -79,7 +79,7 @@ Forwarded: no - one part needs Python 3.6+
 -            if isinstance(value, collections.abc.Mapping):
 -                sub_config = config.get(key, {})
 -                config[key] = _update_config(sub_config, value)
-+     def nestedupdate(old_d, new_d):
++    def nestedupdate(old_d, new_d):
 +        for k, v in new_d.items():
 +            if isinstance(v, collections.abc.Mapping):
 +                if k not in old_d:



View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/09508b14b49e6fbeee67afbbee1a1634181f6358...80b1aa4e230c00de2a0bbe14a80729ec0cd89924

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/09508b14b49e6fbeee67afbbee1a1634181f6358...80b1aa4e230c00de2a0bbe14a80729ec0cd89924
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