[med-svn] [Git][med-team/macs][master] 2 commits: New Build-Depends: python3-hmmlearn

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / macs


Commits:
8eea2152 by Andreas Tille at 2023-11-15T08:46:14+01:00
New Build-Depends: python3-hmmlearn

- - - - -
2a95bbf5 by Andreas Tille at 2023-11-15T11:12:36+01:00
Fix location of simde header

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/patches/series
- + debian/patches/simde.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,8 +1,8 @@
 macs (3.0.0~b3-1) UNRELEASED; urgency=medium
 
   * New upstream version
-  * New Build-Depends: python3-cykhash
-  TODO: New dependency hmmlearn
+  * New Build-Depends: python3-cykhash, python3-hmmlearn
+  * Fix location of simde header
 
  -- Andreas Tille <tille at debian.org>  Tue, 14 Nov 2023 10:43:27 +0100
 


=====================================
debian/control
=====================================
@@ -6,12 +6,15 @@ Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
                dh-sequence-python3,
+               pybuild-plugin-pyproject,
                python3-all-dev,
                python3-numpy,
                python3-setuptools,
                python3-pip,
                python3-pytest,
                python3-cykhash,
+               python3-hmmlearn,
+               libsimde-dev,
                cython3,
                help2man,
                procps


=====================================
debian/patches/series
=====================================
@@ -1,2 +1,3 @@
 keep_debug
 link-libm.patch
+simde.patch


=====================================
debian/patches/simde.patch
=====================================
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Tue, 14 Nov 2023 10:43:27 +0100
+Description: Fix location of simde header
+
+--- a/MACS3/fermi-lite/ksw.c
++++ b/MACS3/fermi-lite/ksw.c
+@@ -28,7 +28,7 @@
+ 
+ /* I modified this according to https://github.com/lh3/bwa/pull/283/*/
+ #ifdef USE_SIMDE
+-#include "lib/x86/sse2.h"
++#include "simde/x86/sse2.h"
+ #else
+ #include <emmintrin.h>
+ #endif



View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/cc2c251151c873700865f71fef2f36ceccfcd8f1...2a95bbf50da785797bca410474676c30d800e5a8

-- 
View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/cc2c251151c873700865f71fef2f36ceccfcd8f1...2a95bbf50da785797bca410474676c30d800e5a8
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