[med-svn] [Git][med-team/augustus][master] fix multiple builds in same directory
Sascha Steinbiss (@satta)
gitlab at salsa.debian.org
Sat Nov 18 08:12:47 GMT 2023
Sascha Steinbiss pushed to branch master at Debian Med / augustus
Commits:
627c2334 by Sascha Steinbiss at 2023-11-18T09:12:14+01:00
fix multiple builds in same directory
- - - - -
2 changed files:
- debian/changelog
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+augustus (3.5.0+dfsg-4) unstable; urgency=medium
+
+ * Ensure multiple builds can be done in same directory.
+ Done by ensuring the directory is cleaned correctly.
+ Closes: #1043915
+
+ -- Sascha Steinbiss <satta at debian.org> Sat, 18 Nov 2023 08:21:25 +0100
+
augustus (3.5.0+dfsg-3) unstable; urgency=medium
* Add patch to fix building with GCC 13.
=====================================
debian/rules
=====================================
@@ -39,13 +39,28 @@ override_dh_auto_clean:
$(MAKE) -C auxprogs/bam2wig clean
$(MAKE) -C auxprogs/compileSpliceCands clean
$(MAKE) -C auxprogs/filterBam clean
+ $(MAKE) -C auxprogs/utrrnaseq clean
rm -rf bin
rm -f debian/*substvars
rm -f debian/mansrc/*.1
find . -name "__pycache__" | xargs -r rm -r
find src -name "*.o" | xargs -r rm
+ find tests -name "*.sam.bam" | xargs -r rm
find auxprogs -name "*.o" | xargs -r rm
- rm -f auxprogs/utrrnaseq/Debug/utrrnaseq src/augustus src/etraining src/fastBlockSearch src/getSeq src/load2db src/load2sqlitedb src/pp_simScore src/prepareAlign
+ rm -rf tests/short/examples/results \
+ tests/short/auxprogs/bam2hints/tmp/ \
+ tests/short/auxprogs/bam2hints/result_files/ \
+ tests/short/auxprogs/filterbam/result_files/
+ rm -f auxprogs/utrrnaseq/Debug/utrrnaseq \
+ src/augustus \
+ src/cxxflags \
+ src/etraining \
+ src/fastBlockSearch \
+ src/getSeq \
+ src/load2db \
+ src/load2sqlitedb \
+ src/pp_simScore \
+ src/prepareAlign
override_dh_auto_build: aln2wig bam2hints bam2wig compileSpliceCands filterBam homGeneMapping joingenes
dh_auto_build
View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/627c2334566ffdf60c35432101828c8e1d4bab4f
--
View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/627c2334566ffdf60c35432101828c8e1d4bab4f
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