[med-svn] [Git][med-team/augustus][master] fix multiple builds in same directory

[Sascha Steinbiss (@satta)]

Sascha Steinbiss pushed to branch master at Debian Med / augustus


Commits:
627c2334 by Sascha Steinbiss at 2023-11-18T09:12:14+01:00
fix multiple builds in same directory

- - - - -


2 changed files:

- debian/changelog
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+augustus (3.5.0+dfsg-4) unstable; urgency=medium
+
+  * Ensure multiple builds can be done in same directory.
+    Done by ensuring the directory is cleaned correctly.
+    Closes: #1043915
+
+ -- Sascha Steinbiss <satta at debian.org>  Sat, 18 Nov 2023 08:21:25 +0100
+
 augustus (3.5.0+dfsg-3) unstable; urgency=medium
 
   * Add patch to fix building with GCC 13.


=====================================
debian/rules
=====================================
@@ -39,13 +39,28 @@ override_dh_auto_clean:
 	$(MAKE) -C auxprogs/bam2wig clean
 	$(MAKE) -C auxprogs/compileSpliceCands clean
 	$(MAKE) -C auxprogs/filterBam clean
+	$(MAKE) -C auxprogs/utrrnaseq clean
 	rm -rf bin
 	rm -f debian/*substvars
 	rm -f debian/mansrc/*.1
 	find . -name "__pycache__" | xargs -r rm -r
 	find src -name "*.o" | xargs -r rm
+	find tests -name "*.sam.bam" | xargs -r rm
 	find auxprogs -name "*.o" | xargs -r rm
-	rm -f auxprogs/utrrnaseq/Debug/utrrnaseq src/augustus src/etraining src/fastBlockSearch src/getSeq src/load2db src/load2sqlitedb src/pp_simScore src/prepareAlign
+	rm -rf tests/short/examples/results \
+	       tests/short/auxprogs/bam2hints/tmp/ \
+		   tests/short/auxprogs/bam2hints/result_files/ \
+		   tests/short/auxprogs/filterbam/result_files/
+	rm -f auxprogs/utrrnaseq/Debug/utrrnaseq \
+	      src/augustus \
+		  src/cxxflags \
+		  src/etraining \
+		  src/fastBlockSearch \
+		  src/getSeq \
+		  src/load2db \
+		  src/load2sqlitedb \
+		  src/pp_simScore \
+		  src/prepareAlign
 
 override_dh_auto_build: aln2wig bam2hints bam2wig compileSpliceCands filterBam homGeneMapping joingenes
 	dh_auto_build



View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/627c2334566ffdf60c35432101828c8e1d4bab4f

-- 
View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/627c2334566ffdf60c35432101828c8e1d4bab4f
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20231118/d4eccc97/attachment-0001.htm>