[med-svn] [Git][med-team/phast][master] 3 commits: Drop atlas from Build-Depends; Provide alternative Build-Depends to liblapack-dev and libblas-dev

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / phast


Commits:
b1ad851f by Andreas Tille at 2023-11-29T10:27:25+01:00
Drop atlas from Build-Depends; Provide alternative Build-Depends to liblapack-dev and libblas-dev

- - - - -
66c7f124 by Andreas Tille at 2023-11-29T10:42:58+01:00
Attempt to replace clapack.h by lapack.h but failed

- - - - -
5b84bb87 by Andreas Tille at 2023-11-29T10:43:30+01:00
routine-update: Standards-Version: 4.6.2

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/lapacke.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+phast (1.6+dfsg-4) UNRELEASED; urgency=medium
+
+  * s/libatlas-base-dev/liblapacke-dev/ in Build-Depends to use LAPACKE
+    instead of clapack
+    Closes: #1056681
+  * Provide alternative Build-Depends to liblapack-dev and libblas-dev
+  * Standards-Version: 4.6.2 (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Wed, 29 Nov 2023 10:25:18 +0100
+
 phast (1.6+dfsg-3) unstable; urgency=medium
 
   * Port to pcre2


=====================================
debian/control
=====================================
@@ -4,14 +4,14 @@ Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
-               liblapack-dev,
-               libblas-dev,
+               liblapack-dev | liblapack.so,
+               libblas-dev | libblas.so,
                libtmglib-dev,
                libpcre2-dev,
                libf2c2-dev,
-               libatlas-base-dev,
+               liblapacke-dev,
                help2man
-Standards-Version: 4.6.0
+Standards-Version: 4.6.2
 Vcs-Browser: https://salsa.debian.org/med-team/phast
 Vcs-Git: https://salsa.debian.org/med-team/phast.git
 Homepage: http://compgen.cshl.edu/phast/


=====================================
debian/patches/lapacke.patch
=====================================
@@ -0,0 +1,25 @@
+Description: Use LAPACKE instead of clapack
+Bug-Debian: https://bugs.debian.org/1056681
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 29 Nov 2023 10:25:18 +0100
+
+--- a/include/phast/external_libs.h
++++ b/include/phast/external_libs.h
+@@ -10,7 +10,7 @@
+ /*
+   
+   This file contains some definitions which are useful for linking to
+-  external libraries (R, clapack, veclib)
++  external libraries (R, lapacke, veclib)
+ 
+  */
+ 
+@@ -40,7 +40,7 @@
+ 
+ #ifndef SKIP_LAPACK 
+ #include <f2c.h>  
+-#include <clapack.h> 
++#include <lapack.h> 
+ #define LAPACK_INT integer
+ #define LAPACK_DOUBLE doublereal
+ #endif  /*ifndef SKIP_LAPACK */


=====================================
debian/patches/series
=====================================
@@ -5,3 +5,4 @@ use_debian_packaged_help2man.patch
 hardening.patch
 fix_test_makefile.patch
 pcre2.patch
+lapacke.patch



View it on GitLab: https://salsa.debian.org/med-team/phast/-/compare/d8241bb6e1d925b1b2d23a6d9ab1278edb809026...5b84bb8742d13b1d054631261b2e706def199080

-- 
View it on GitLab: https://salsa.debian.org/med-team/phast/-/compare/d8241bb6e1d925b1b2d23a6d9ab1278edb809026...5b84bb8742d13b1d054631261b2e706def199080
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