[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Sun Oct 22 02:43:38 BST 2023



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
09fc1055 by Andreas Tille at 2023-10-22T01:43:30+00:00
automatic update

- - - - -


4 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
- python-team-tests.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,8 +1,8 @@
-Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
+Last-Update: Sun, 22 Oct 2023 01:42:04 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- orthanc-wsi                   |     62 | {covid-19,imaging,oncology,laboratory,his,practice} | 
+ orthanc-wsi                   |     62 | {his,oncology,practice,covid-19,laboratory,imaging} | 
  dicomscope                    |     26 | {imaging}                                           | 
  orthanc-webviewer             |     24 | {imaging}                                           | 
  amide                         |     22 | {imaging}                                           | 
@@ -10,7 +10,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  mrtrix3                       |     12 | {imaging}                                           | 
  orthanc-dicomweb              |     12 | {imaging,covid-19}                                  | 
  orthanc-postgresql            |     12 | {imaging}                                           | 
- oscar                         |     12 | {data,practice,tools}                               | 
+ oscar                         |     12 | {data,tools,practice}                               | 
  gnumed-server                 |     11 | {covid-19,practice}                                 | 
  pixelmed                      |     11 | {imaging}                                           | 
  orthanc-mysql                 |     10 | {imaging}                                           | 
@@ -24,29 +24,29 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  libminc                       |      4 | {imaging-dev}                                       | 
  librg-utils-perl              |      4 | {bio}                                               | 
  orthanc-python                |      4 | {covid-19}                                          | 
- bio-tradis                    |      3 | {bio-dev,bio}                                       | 
+ bio-tradis                    |      3 | {bio,bio-dev}                                       | 
  blimps                        |      3 | {bio}                                               | 
  ghmm                          |      3 | {bio}                                               | 
  libdivsufsort                 |      3 | {bio-dev}                                           | 
  obitools                      |      3 | {bio}                                               | 
  orthanc-neuro                 |      3 | {psychology,imaging}                                | 
  tracetuner                    |      3 | {bio}                                               | 
- treeview                      |      3 | {bio,bio-phylogeny}                                 | 
+ treeview                      |      3 | {bio-phylogeny,bio}                                 | 
  getdata                       |      2 | {bio}                                               | 
- melting                       |      2 | {bio,cloud}                                         | 
+ melting                       |      2 | {cloud,bio}                                         | 
  phyutility                    |      2 | {cloud,bio}                                         | 
  piler                         |      2 | {bio}                                               | 
- proalign                      |      2 | {bio-phylogeny,bio}                                 | 
+ proalign                      |      2 | {bio,bio-phylogeny}                                 | 
  pymia                         |      2 | {imaging-dev}                                       | 
  seq-gen                       |      2 | {bio}                                               | 
- sibsim4                       |      2 | {bio,cloud}                                         | 
+ sibsim4                       |      2 | {cloud,bio}                                         | 
  sift                          |      2 | {bio}                                               | 
  spread-phy                    |      2 | {bio-phylogeny,bio}                                 | 
  staden                        |      2 | {bio}                                               | 
- thesias                       |      2 | {covid-19,bio}                                      | 
- vienna-rna                    |      2 | {covid-19,bio}                                      | 
- anfo                          |      1 | {cloud,bio}                                         | 
- arden                         |      1 | {cloud,bio}                                         | 
+ thesias                       |      2 | {bio,covid-19}                                      | 
+ vienna-rna                    |      2 | {bio,covid-19}                                      | 
+ anfo                          |      1 | {bio,cloud}                                         | 
+ arden                         |      1 | {bio,cloud}                                         | 
  assemblytics                  |      1 | {bio}                                               | 
  beast-mcmc                    |      1 | {bio-phylogeny,bio}                                 | 
  biojava6-live                 |      1 | {bio-dev}                                           | 
@@ -67,9 +67,9 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  mauve-aligner                 |      1 | {bio}                                               | 
  microbegps                    |      1 | {bio}                                               | 
  ncbi-igblast                  |      1 | {bio}                                               | 
- pigx-rnaseq                   |      1 | {bio,covid-19}                                      | 
- plasmidid                     |      1 | {bio,covid-19}                                      | 
- pplacer                       |      1 | {bio-phylogeny,bio,covid-19}                        | 
+ pigx-rnaseq                   |      1 | {covid-19,bio}                                      | 
+ plasmidid                     |      1 | {covid-19,bio}                                      | 
+ pplacer                       |      1 | {bio,bio-phylogeny,covid-19}                        | 
  pscan-chip                    |      1 | {bio}                                               | 
  python-seqcluster             |      1 | {bio}                                               | 
  rambo-k                       |      1 | {bio}                                               | 
@@ -88,9 +88,9 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  surankco                      |      1 | {bio}                                               | 
  tophat-recondition            |      1 | {covid-19,bio}                                      | 
  trace2dbest                   |      1 | {bio}                                               | 
- varscan                       |      1 | {bio,covid-19}                                      | 
+ varscan                       |      1 | {covid-19,bio}                                      | 
  xxsds-dynamic                 |      1 | {bio-dev}                                           | 
- acedb                         |      0 | {cloud,bio}                                         | 
+ acedb                         |      0 | {bio,cloud}                                         | 
  bambamc                       |      0 | {bio-dev}                                           | 
  biosyntax                     |      0 | {bio}                                               | 
  brig                          |      0 | {bio}                                               | 
@@ -102,17 +102,17 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  clonalframeml                 |      0 | {bio,covid-19}                                      | 
  ctn                           |      0 | {imaging-dev}                                       | 
  cutesv                        |      0 | {bio}                                               | 
- dextractor                    |      0 | {bio,covid-19}                                      | 
+ dextractor                    |      0 | {covid-19,bio}                                      | 
  eegdev                        |      0 | {imaging-dev}                                       | 
  elastix                       |      0 | {imaging}                                           | 
  embassy-domainatrix           |      0 | {bio,cloud}                                         | 
- embassy-domalign              |      0 | {bio,cloud}                                         | 
- embassy-domsearch             |      0 | {bio,cloud}                                         | 
+ embassy-domalign              |      0 | {cloud,bio}                                         | 
+ embassy-domsearch             |      0 | {cloud,bio}                                         | 
  fis-gtm                       |      0 | {his}                                               | 
  gatk-bwamem                   |      0 | {bio-dev}                                           | 
- htscodecs                     |      0 | {bio-dev,covid-19}                                  | 
+ htscodecs                     |      0 | {covid-19,bio-dev}                                  | 
  ipig                          |      0 | {bio}                                               | 
- jmodeltest                    |      0 | {bio,bio-phylogeny}                                 | 
+ jmodeltest                    |      0 | {bio-phylogeny,bio}                                 | 
  kmerresistance                |      0 | {bio}                                               | 
  libbioparser-dev              |      0 | {bio-dev}                                           | 
  libbiosoup-dev                |      0 | {bio-dev}                                           | 
@@ -126,7 +126,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  libctapimkt                   |      0 | {practice}                                          | 
  libgkarrays                   |      0 | {bio-dev}                                           | 
  libhmsbeagle                  |      0 | {bio-dev}                                           | 
- libics                        |      0 | {imaging-dev,covid-19}                              | 
+ libics                        |      0 | {covid-19,imaging-dev}                              | 
  libjloda-java                 |      0 | {bio-dev}                                           | 
  libmems                       |      0 | {bio-dev}                                           | 
  libmialm                      |      0 | {imaging-dev}                                       | 
@@ -146,7 +146,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  metastudent-data-2            |      0 | {bio}                                               | 
  mhap                          |      0 | {bio,bio-ngs}                                       | 
  mia                           |      0 | {imaging-dev}                                       | 
- milib                         |      0 | {covid-19,bio-dev}                                  | 
+ milib                         |      0 | {bio-dev,covid-19}                                  | 
  ncbi-vdb                      |      0 | {bio-dev}                                           | 
  opencfu                       |      0 | {laboratory}                                        | 
  orthanc-imagej                |      0 | {imaging}                                           | 
@@ -158,7 +158,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  plasmidseeker                 |      0 | {bio}                                               | 
  provean                       |      0 | {bio}                                               | 
  python-cgelib                 |      0 | {bio-dev}                                           | 
- python-seqcluster             |      0 | {covid-19,bio-dev}                                  | 
+ python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
  qcumber                       |      0 | {bio}                                               | 
  resfinder-db                  |      0 | {bio}                                               | 
  runcircos-gui                 |      0 | {bio}                                               | 
@@ -172,11 +172,11 @@ Last-Update: Sat, 21 Oct 2023 13:42:04 +0000
  surpyvor                      |      0 | {bio}                                               | 
  terraphast                    |      0 | {bio}                                               | 
  terraphast                    |      0 | {bio-dev}                                           | 
- tipp                          |      0 | {bio,covid-19}                                      | 
+ tipp                          |      0 | {covid-19,bio}                                      | 
  xdffileio                     |      0 | {imaging-dev}                                       | 
  xpore                         |      0 | {bio}                                               | 
  gatk-fermilite                |     -1 | {bio-dev}                                           | 
- libmaus2                      |     -1 | {covid-19,bio-dev}                                  | 
+ libmaus2                      |     -1 | {bio-dev,covid-19}                                  | 
  mssstest                      |     -1 | {tools}                                             | 
 (203 rows)
 


=====================================
debian-science-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
+Last-Update: Sun, 22 Oct 2023 01:42:07 +0000
 
        Source                              | Vote   |             Tasks                                                   |                                Tags                                
 -------------------------------------------+--------+---------------------------------------------------------------------+--------------------------------------------------------------------
@@ -15,7 +15,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  arpack                                    |     80 | {mathematics-dev}                                                   | 
  imview                                    |     44 | {viewing}                                                           | 
  pyzo                                      |     36 | {numericalcomputation}                                              | 
- fftw                                      |     35 | {meteorology-dev,mathematics-dev,physics-dev}                       | 
+ fftw                                      |     35 | {physics-dev,mathematics-dev,meteorology-dev}                       | 
  scalapack                                 |     35 | {nanoscale-physics-dev}                                             | 
  ntl                                       |     33 | {mathematics-dev}                                                   | 
  ppl                                       |     32 | {numericalcomputation}                                              | 
@@ -32,8 +32,8 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  cliquer                                   |     16 | {mathematics-dev}                                                   | 
  dune-uggrid                               |     16 | {mathematics-dev}                                                   | 
  feedgnuplot                               |     16 | {viewing}                                                           | 
- fftw                                      |     16 | {physics-dev,mathematics-dev,meteorology-dev}                       | 
- rubiks                                    |     16 | {mathematics,geometry}                                              | 
+ fftw                                      |     16 | {physics-dev,meteorology-dev,mathematics-dev}                       | 
+ rubiks                                    |     16 | {geometry,mathematics}                                              | 
  lrcalc                                    |     15 | {mathematics-dev}                                                   | 
  geg                                       |     14 | {viewing}                                                           | 
  guiqwt                                    |     14 | {viewing,numericalcomputation}                                      | 
@@ -51,16 +51,16 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  mbpoll                                    |     11 | {simulations}                                                       | 
  ros-rosconsole                            |     11 | {robotics-dev}                                                      | 
  vitables                                  |     11 | {numericalcomputation}                                              | 
- coinor-symphony                           |     10 | {logic,mathematics,numericalcomputation}                            | 
+ coinor-symphony                           |     10 | {logic,numericalcomputation,mathematics}                            | 
  alberta                                   |      9 | {engineering-dev}                                                   | 
  pcl                                       |      9 | {robotics-dev}                                                      | 
  dune-istl                                 |      7 | {mathematics-dev}                                                   | 
- libitpp                                   |      7 | {mathematics-dev,engineering-dev}                                   | 
+ libitpp                                   |      7 | {engineering-dev,mathematics-dev}                                   | 
  lxi-tools                                 |      7 | {engineering,dataacquisition}                                       | 
  mathgl                                    |      7 | {viewing}                                                           | 
- persalys                                  |      7 | {statistics,engineering,mathematics}                                | 
+ persalys                                  |      7 | {statistics,mathematics,engineering}                                | 
  amp                                       |      6 | {chemistry}                                                         | 
- debian-science                            |      6 | {physics,mathematics,economics,nanoscale-physics,machine-learning}  | 
+ debian-science                            |      6 | {physics,economics,nanoscale-physics,machine-learning,mathematics}  | 
  dune-localfunctions                       |      6 | {mathematics-dev}                                                   | 
  dxsamples                                 |      6 | {nanoscale-physics}                                                 | 
  feff85exafs                               |      6 | {chemistry}                                                         | 
@@ -70,15 +70,15 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  apophenia                                 |      5 | {statistics}                                                        | 
  auto-07p                                  |      5 | {mathematics}                                                       | 
  coinmp                                    |      5 | {numericalcomputation,logic,mathematics-dev}                        | 
- debian-science                            |      5 | {statistics,physics,nanoscale-physics,economics}                    | 
+ debian-science                            |      5 | {statistics,nanoscale-physics,physics,economics}                    | 
  form                                      |      5 | {mathematics}                                                       | 
- getdp                                     |      5 | {mathematics,engineering,simulations}                               | 
+ getdp                                     |      5 | {engineering,mathematics,simulations}                               | 
  libxsmm                                   |      5 | {mathematics-dev}                                                   | 
  muparser                                  |      5 | {mathematics-dev}                                                   | 
- persalys                                  |      5 | {statistics,engineering,mathematics}                                | 
+ persalys                                  |      5 | {mathematics,statistics,engineering}                                | 
  rheolef                                   |      5 | {mathematics}                                                       | 
- toulbar2                                  |      5 | {physics,logic,mathematics,numericalcomputation}                    | 
- debian-science                            |      4 | {economics,nanoscale-physics,machine-learning,physics}              | 
+ toulbar2                                  |      5 | {logic,physics,numericalcomputation,mathematics}                    | 
+ debian-science                            |      4 | {physics,machine-learning,economics,nanoscale-physics}              | 
  hpcc                                      |      4 | {numericalcomputation,distributedcomputing}                         | 
  ipe-tools                                 |      4 | {typesetting}                                                       | 
  libccp4                                   |      4 | {nanoscale-physics-dev}                                             | 
@@ -100,14 +100,14 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  etsf-io                                   |      3 | {nanoscale-physics,physics}                                         | 
  libcgns                                   |      3 | {engineering-dev}                                                   | 
  libmatheval                               |      3 | {mathematics-dev}                                                   | 
- libvigraimpex                             |      3 | {machine-learning,imageanalysis-dev}                                | 
- metis-edf                                 |      3 | {engineering,numericalcomputation}                                  | 
+ libvigraimpex                             |      3 | {imageanalysis-dev,machine-learning}                                | 
+ metis-edf                                 |      3 | {numericalcomputation,engineering}                                  | 
  mmdb                                      |      3 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
  newmat                                    |      3 | {mathematics-dev}                                                   | 
  opencascade                               |      3 | {simulations}                                                       | 
  openstereogram                            |      3 | {tools}                                                             | 
  qd                                        |      3 | {mathematics-dev}                                                   | 
- spfft                                     |      3 | {meteorology-dev,nanoscale-physics-dev,physics-dev,mathematics-dev} | 
+ spfft                                     |      3 | {mathematics-dev,physics-dev,nanoscale-physics-dev,meteorology-dev} | 
  syrthes                                   |      3 | {engineering}                                                       | 
  x13as                                     |      3 | {economics}                                                         | 
  apache-opennlp                            |      2 | {linguistics}                                                       | 
@@ -118,7 +118,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  debian-science                            |      2 | {tools}                                                             | 
  dxflib                                    |      2 | {engineering-dev}                                                   | 
  fastjet                                   |      2 | {highenergy-physics-dev}                                            | 
- jeuclid                                   |      2 | {viewing,typesetting}                                               | 
+ jeuclid                                   |      2 | {typesetting,viewing}                                               | 
  libcgns                                   |      2 | {engineering}                                                       | 
  libcvd                                    |      2 | {imageanalysis}                                                     | 
  libvigraimpex                             |      2 | {machine-learning,imageanalysis-dev}                                | 
@@ -145,19 +145,19 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  frog                                      |      1 | {linguistics}                                                       | 
  gemmlowp                                  |      1 | {mathematics-dev}                                                   | 
  harp                                      |      1 | {meteorology}                                                       | 
- hepmc3                                    |      1 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
+ hepmc3                                    |      1 | {highenergy-physics-dev,nanoscale-physics-dev}                      | 
  ipe-tools                                 |      1 | {typesetting}                                                       | 
  itsol                                     |      1 | {mathematics-dev}                                                   | 
  libcvd                                    |      1 | {imageanalysis-dev}                                                 | 
  libdogleg                                 |      1 | {mathematics-dev}                                                   | 
- libgtkdatabox                             |      1 | {engineering-dev,viewing-dev}                                       | 
+ libgtkdatabox                             |      1 | {viewing-dev,engineering-dev}                                       | 
  liblbfgs                                  |      1 | {mathematics-dev}                                                   | 
  meshsdfilter                              |      1 | {mathematics-dev}                                                   | 
  mpi4py-fft                                |      1 | {mathematics-dev}                                                   | 
  mrmpi                                     |      1 | {tools}                                                             | 
  mseed2sac                                 |      1 | {dataacquisition-dev}                                               | 
  ncrystal                                  |      1 | {nanoscale-physics-dev,highenergy-physics-dev}                      | 
- neartree                                  |      1 | {numericalcomputation,mathematics-dev}                              | 
+ neartree                                  |      1 | {mathematics-dev,numericalcomputation}                              | 
  ortools                                   |      1 | {mathematics-dev}                                                   | 
  python-aws-xray-sdk                       |      1 | {dataacquisition-dev}                                               | 
  python-opcodes                            |      1 | {tools}                                                             | 
@@ -169,7 +169,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  ssm                                       |      1 | {nanoscale-physics-dev}                                             | 
  ssm                                       |      1 | {nanoscale-physics}                                                 | 
  taurus                                    |      1 | {dataacquisition}                                                   | 
- trilinos                                  |      1 | {engineering-dev,physics-dev,mathematics-dev}                       | 
+ trilinos                                  |      1 | {physics-dev,mathematics-dev,engineering-dev}                       | 
  ufo-core                                  |      1 | {nanoscale-physics-dev}                                             | 
  vdt                                       |      1 | {mathematics-dev}                                                   | 
  vlfeat                                    |      1 | {imageanalysis-dev}                                                 | 
@@ -182,8 +182,8 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  apertium-urd                              |      0 | {linguistics}                                                       | 
  apertium-urd-hin                          |      0 | {linguistics}                                                       | 
  asl                                       |      0 | {physics-dev}                                                       | 
- calculix-ccx-doc                          |      0 | {engineering,numericalcomputation,simulations}                      | 
- calculix-ccx-test                         |      0 | {numericalcomputation,engineering,simulations}                      | 
+ calculix-ccx-doc                          |      0 | {simulations,numericalcomputation,engineering}                      | 
+ calculix-ccx-test                         |      0 | {simulations,numericalcomputation,engineering}                      | 
  cld2                                      |      0 | {linguistics}                                                       | 
  clhep                                     |      0 | {highenergy-physics-dev}                                            | 
  coda                                      |      0 | {meteorology-dev}                                                   | 
@@ -237,7 +237,7 @@ Last-Update: Sat, 21 Oct 2023 13:42:08 +0000
  sagemath-database-elliptic-curves         |      0 | {mathematics}                                                       | 
  sagemath-database-graphs                  |      0 | {mathematics}                                                       | 
  sagemath-database-polytopes               |      0 | {mathematics}                                                       | 
- schroedinger-maeparser                    |      0 | {nanoscale-physics-dev,chemistry}                                   | 
+ schroedinger-maeparser                    |      0 | {chemistry,nanoscale-physics-dev}                                   | 
  siscone                                   |      0 | {highenergy-physics-dev}                                            | 
  slicot                                    |      0 | {engineering-dev,robotics-dev}                                      | 
  tachyon                                   |      0 | {mathematics}                                                       | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.

=====================================
python-team-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 21 Oct 2023 13:42:10 +0000
+Last-Update: Sun, 22 Oct 2023 01:42:11 +0000
 
      Source                             | Vote   |                          Tags                          
 ----------------------------------------+--------+--------------------------------------------------------



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/09fc1055e458a0289fe487ed6b92ede4023aeb0e

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/09fc1055e458a0289fe487ed6b92ede4023aeb0e
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