[med-svn] [Git][med-team/python-pauvre][master] 3 commits: pandas-2.0.patch: new: fix ftbfs with pandas 2.0.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / python-pauvre


Commits:
97e75c64 by Étienne Mollier at 2023-09-06T22:17:50+02:00
pandas-2.0.patch: new: fix ftbfs with pandas 2.0.

Closes: #1044070

- - - - -
5c8e6e4c by Étienne Mollier at 2023-09-06T22:18:29+02:00
d/copyright: bump packaging copyright year.

- - - - -
988b0a75 by Étienne Mollier at 2023-09-06T22:19:03+02:00
ready to upload to unstable.

- - - - -


4 changed files:

- debian/changelog
- debian/copyright
- + debian/patches/pandas-2.0.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+python-pauvre (0.2.3-3) unstable; urgency=medium
+
+  * pandas-2.0.patch: new: fix ftbfs with pandas 2.0. (Closes: #1044070)
+  * d/copyright: bump packaging copyright year.
+
+ -- Étienne Mollier <emollier at debian.org>  Wed, 06 Sep 2023 22:18:51 +0200
+
 python-pauvre (0.2.3-2) unstable; urgency=medium
 
   * biopython-1.80.patch: add; migrate away from Bio.SubsMat.


=====================================
debian/copyright
=====================================
@@ -9,7 +9,7 @@ License: GPL-3+
 Files: debian/*
 Copyright: 2020 Andreas Tille <tille at debian.org>
            2021 Nilesh Patra <nilesh at debian.org>
-           2020-2022 Étienne Mollier <emollier at debian.org>
+           2020-2023 Étienne Mollier <emollier at debian.org>
 License: GPL-3+
 
 License: GPL-3+


=====================================
debian/patches/pandas-2.0.patch
=====================================
@@ -0,0 +1,20 @@
+Description: fix test failure with pandas 2.0
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1044070
+Forwarded: https://github.com/conchoecia/pauvre/pull/47
+Last-Update: 2023-09-06
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- python-pauvre.orig/pauvre/functions.py
++++ python-pauvre/pauvre/functions.py
+@@ -72,8 +72,8 @@
+         self.features = pd.read_csv(self.filename, comment='#',
+                                     sep='\t', names=gffnames)
+         self.features['name'] = self.features['tags'].apply(self._get_name)
+-        self.features.drop('dunno1', 1, inplace=True)
+-        self.features.drop('dunno2', 1, inplace=True)
++        self.features.drop('dunno1', axis=1, inplace=True)
++        self.features.drop('dunno2', axis=1, inplace=True)
+         self.features.reset_index(inplace=True, drop=True)
+         # warn the user if there are CDS or gene entries not divisible by three
+         self._check_triplets()


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 2to3.patch
 lsi-test-args.patch
 biopython-1.80.patch
+pandas-2.0.patch



View it on GitLab: https://salsa.debian.org/med-team/python-pauvre/-/compare/a4bce77d6e8bbb48710c16a94bc7e032ba98f85c...988b0a75cda29054a0d33d75a96613b0d64c6bd2

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pauvre/-/compare/a4bce77d6e8bbb48710c16a94bc7e032ba98f85c...988b0a75cda29054a0d33d75a96613b0d64c6bd2
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