[med-svn] [Git][med-team/microbiomeutil][master] 6 commits: Fix implicit declaration of function isprint
Andreas Tille (@tille)
gitlab at salsa.debian.org
Wed Apr 10 15:12:49 BST 2024
Andreas Tille pushed to branch master at Debian Med / microbiomeutil
Commits:
759fcdab by Andreas Tille at 2024-04-10T15:39:08+02:00
Fix implicit declaration of function isprint
- - - - -
a4992f6e by Andreas Tille at 2024-04-10T15:39:57+02:00
routine-update: Standards-Version: 4.7.0
- - - - -
879ba250 by Andreas Tille at 2024-04-10T13:40:09+00:00
Use secure URI in Homepage field.
Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
- - - - -
b34d83bb by Andreas Tille at 2024-04-10T15:59:52+02:00
Lintian-overrides (see lintian bug #1017966)
- - - - -
480abe4f by Andreas Tille at 2024-04-10T16:03:01+02:00
Add DEP3 field "Forwarded: no (upstream is dead)"
- - - - -
4ca75718 by Andreas Tille at 2024-04-10T16:06:28+02:00
Upload to unstable
- - - - -
11 changed files:
- debian/changelog
- debian/control
- debian/patches/cross.patch
- debian/patches/enable_tests_in_local_dir.patch
- debian/patches/find_relocated_libraries.patch
- debian/patches/find_relocated_resources.patch
- debian/patches/fix_perl_interpreter.patch
- debian/patches/hardening.patch
- + debian/patches/implicit-function.patch
- debian/patches/series
- + debian/source/lintian-overrides
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+microbiomeutil (20101212+dfsg1-6) unstable; urgency=medium
+
+ * Fix implicit declaration of function isprint
+ Closes: #1066532
+ * Standards-Version: 4.7.0 (routine-update)
+ * Use secure URI in Homepage field.
+ * Lintian-overrides (see lintian bug #1017966)
+ * Add DEP3 field "Forwarded: no (upstream is dead)"
+
+ -- Andreas Tille <tille at debian.org> Wed, 10 Apr 2024 16:03:07 +0200
+
microbiomeutil (20101212+dfsg1-5) unstable; urgency=medium
[ Helmut Grohne ]
=====================================
debian/control
=====================================
@@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13),
cdbfasta,
ncbi-blast+-legacy,
debhelper
-Standards-Version: 4.6.0
+Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil
Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git
-Homepage: http://microbiomeutil.sourceforge.net/
+Homepage: https://microbiomeutil.sourceforge.net/
Rules-Requires-Root: no
Package: microbiomeutil
=====================================
debian/patches/cross.patch
=====================================
@@ -2,6 +2,7 @@ Last-Update: Sun, 9 Jan 2022 20:11:27 +0100
Author: Helmut Grohne <helmut at subdivi.de>
Bug-Debian: https://bugs.debian.org/1003411
Description: Do not hard code the build architecture compiler
+Forwarded: no (upstream is dead)
--- microbiomeutil-20101212+dfsg1.orig/NAST-iEr/Makefile
+++ microbiomeutil-20101212+dfsg1/NAST-iEr/Makefile
=====================================
debian/patches/enable_tests_in_local_dir.patch
=====================================
@@ -2,6 +2,7 @@ Author: Andreas Tille <tille at debian.org>
Last-Update: Wed, 20 Jan 2016 09:10:18 +0100
Description: To run build time tests enable running the scripts
from build path
+Forwarded: no (upstream is dead)
--- a/NAST-iEr/run_NAST-iEr.pl
+++ b/NAST-iEr/run_NAST-iEr.pl
=====================================
debian/patches/find_relocated_libraries.patch
=====================================
@@ -1,6 +1,8 @@
-# Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink.
-# So I'm hard-coding the location to get around this.
-# Patch added by Tim Booth, see changelog
+Description: Due to liberal use of FindBin, ChimeraSlayer can't be run from a symlink.
+ So hard-coding the location to get around this.
+Author: Tim Booth <tbooth at ceh.ac.uk>
+Forwarded: no (upstream is dead)
+
--- a/ChimeraSlayer/ChimeraSlayer.pl
+++ b/ChimeraSlayer/ChimeraSlayer.pl
@@ -4,7 +4,9 @@
=====================================
debian/patches/find_relocated_resources.patch
=====================================
@@ -1,5 +1,6 @@
Author: Tim Booth <tbooth at ceh.ac.uk>
Description: Adapt path of some resources to Debian installation
+Forwarded: no (upstream is dead)
--- a/ChimeraSlayer/ChimeraSlayer.pl
+++ b/ChimeraSlayer/ChimeraSlayer.pl
=====================================
debian/patches/fix_perl_interpreter.patch
=====================================
@@ -1,5 +1,6 @@
Author: Tim Booth <tbooth at ceh.ac.uk>
Description: Remove wrong or fix perl interpreter location
+Forwarded: no (upstream is dead)
--- a/NAST-iEr/PerlLib/Fasta_reader.pm
+++ b/NAST-iEr/PerlLib/Fasta_reader.pm
=====================================
debian/patches/hardening.patch
=====================================
@@ -1,6 +1,7 @@
Author: Andreas Tille <tille at debian.org>
LastChanged: Tue, 04 Jun 2013 10:35:17 +0200
Description: Enable propagation of hardening options
+Forwarded: no (upstream is dead)
--- a/NAST-iEr/Makefile
+++ b/NAST-iEr/Makefile
=====================================
debian/patches/implicit-function.patch
=====================================
@@ -0,0 +1,13 @@
+Description: Fix implicit declaration of function isprint
+Bug-Debian: https://bugs.debian.org/1066532
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 10 Apr 2024 15:37:10 +0200
+Forwarded: no (upstream is dead)
+
+--- a/NAST-iEr/NAST-iEr.c
++++ b/NAST-iEr/NAST-iEr.c
+@@ -1,3 +1,4 @@
++#include <ctype.h>
+ #include <stdlib.h>
+ #include <stdio.h>
+ #include <string.h>
=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ find_relocated_libraries.patch
hardening.patch
enable_tests_in_local_dir.patch
cross.patch
+implicit-function.patch
=====================================
debian/source/lintian-overrides
=====================================
@@ -0,0 +1,2 @@
+# See lintian bug #1017966
+microbiomeutil source: source-is-missing [docs/microbiomeutil.html]
View it on GitLab: https://salsa.debian.org/med-team/microbiomeutil/-/compare/f076099590791da6fd3ce48e6fb86bd872afb994...4ca7571876e22784a4e901628c3b71e2b198a420
--
View it on GitLab: https://salsa.debian.org/med-team/microbiomeutil/-/compare/f076099590791da6fd3ce48e6fb86bd872afb994...4ca7571876e22784a4e901628c3b71e2b198a420
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20240410/58ab9083/attachment-0001.htm>
More information about the debian-med-commit
mailing list