[med-svn] [Git][med-team/bioperl-run][master] 5 commits: d/control: restrict emboss build-dependency.

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bioperl-run


Commits:
853b5d6c by Étienne Mollier at 2024-04-26T21:50:21+02:00
d/control: restrict emboss build-dependency.

emboss is not available anymore on 32-bit and big endian architectures.
It is thus not possible anymore to test it in such context.

- - - - -
58eac63f by Étienne Mollier at 2024-04-26T21:52:06+02:00
d/control: demote bioperl-run recommends to suggestions.

emboss, hmmer and infernal are currently not available on some release
architectures.  Demoting them helps getting the autodep8 perl test
back on tracks at least on s390x.

- - - - -
f0384a77 by Étienne Mollier at 2024-04-27T08:00:13+02:00
d/control: demote tigr-glimmer to suggestion.

- - - - -
1afec6cf by Étienne Mollier at 2024-04-27T10:39:05+02:00
d/control: also restrict tigr-glimmer build-deps architecture set.

- - - - -
16f1a768 by Étienne Mollier at 2024-04-27T21:51:26+02:00
ready to upload to unstable.

- - - - -


2 changed files:

- debian/changelog
- debian/control


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+bioperl-run (1.7.3-11) unstable; urgency=medium
+
+  * d/control: restrict emboss build-dependency.
+    emboss is not available anymore on 32-bit and big endian architectures.
+    It is thus not possible anymore to test it in such context.
+  * d/control: demote bioperl-run recommends to suggestions.
+    emboss, hmmer and infernal are currently not available on some release
+    architectures.  Demoting them helps getting the autodep8 perl test
+    back on tracks at least on s390x.
+  * d/control: demote tigr-glimmer to suggestion.
+  * d/control: also restrict tigr-glimmer build-deps architecture set.
+
+ -- Étienne Mollier <emollier at debian.org>  Sat, 27 Apr 2024 21:48:57 +0200
+
 bioperl-run (1.7.3-10) unstable; urgency=medium
 
   * d/control: restrict some build-deps to amd64.


=====================================
debian/control
=====================================
@@ -34,7 +34,7 @@ Build-Depends-Indep: perl,
                      bedtools-test,
                      ncbi-blast+-legacy,
                      clustalw [any-amd64],
-                     emboss,
+                     emboss [any-amd64 arm64 mips64el ppc64el riscv64],
                      exonerate,
                      hmmer [any-amd64 any-i386 powerpc ppc64],
                      hyphy-pt | hyphy-mpi [any-amd64],
@@ -51,7 +51,7 @@ Build-Depends-Indep: perl,
                      raxml,
                      samtools [any-amd64],
                      sim4,
-                     tigr-glimmer,
+                     tigr-glimmer [any-amd64 arm64 mips64el ppc64el riscv64],
                      wise,
                      fasttree,
                      lagan,
@@ -82,10 +82,7 @@ Depends: ${misc:Depends},
 Recommends: amap-align,
             ncbi-blast+-legacy,
             bwa,
-            emboss,
             exonerate,
-            hmmer,
-            infernal,
             kalign,
             maq,
             mafft,
@@ -98,7 +95,6 @@ Recommends: amap-align,
             raxml,
             sim4,
             t-coffee,
-            tigr-glimmer,
             wise,
             lagan,
             pal2nal
@@ -108,11 +104,15 @@ Suggests: gmap,
           bedtools,
           bowtie,
           clustalw,
+          emboss,
+          hmmer,
           hyphy-pt | hyphy-mpi,
+          infernal,
           libbio-tools-run-alignment-clustalw-perl,
           pftools,
           phyml,
-          samtools
+          samtools,
+          tigr-glimmer
 # gmap, fasta3, and trnascan-se is non-free
 # Removed from Debian at all: molphy,
 # Removed from Debian but might be reintroduced: ensembl,



View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/-/compare/61a3a7a674a41b9de418b0015726615954aeecdf...16f1a768366cc95e31c9582108f1811781127b76

-- 
View it on GitLab: https://salsa.debian.org/med-team/bioperl-run/-/compare/61a3a7a674a41b9de418b0015726615954aeecdf...16f1a768366cc95e31c9582108f1811781127b76
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