[med-svn] [Git][med-team/snakemake][debian-v7] add forgotten file

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch debian-v7 at Debian Med / snakemake


Commits:
1d36855f by Rebecca N. Palmer at 2024-08-02T22:02:32+01:00
add forgotten file

- - - - -


1 changed file:

- + debian/patches/cancelscript_debug.patch


Changes:

=====================================
debian/patches/cancelscript_debug.patch
=====================================
@@ -0,0 +1,51 @@
+Description: Extra debug output from test_cluster_cancel*
+
+(failing on riscv64)
+
+Author: Rebecca N. Palmer <rebecca_palmer at zoho.com>
+Forwarded: not-needed
+
+--- a/tests/common.py
++++ b/tests/common.py
+@@ -226,6 +226,7 @@ def run(
+                     process.send_signal(signal.SIGINT)
+                     time.sleep(2)
+                     success = process.returncode == 0
++                    run_stdout=process.stdout
+         except subprocess.CalledProcessError as e:
+             success = False
+             print(e.stdout.decode(), file=sys.stderr)
+@@ -251,6 +252,9 @@ def run(
+         )
+ 
+     if shouldfail:
++        if shellcmd and "cancel" in shellcmd:
++            print("cancel",run_stdout,"Workdir:")
++            print_tree(tmpdir, exclude=".snakemake/conda")
+         assert not success, "expected error on execution"
+     else:
+         if not success:
+--- a/tests/tests.py
++++ b/tests/tests.py
+@@ -133,11 +133,13 @@ def test_cluster_cancelscript():
+         cleanup=False,
+         sigint_after=4,
+     )
++    assert os.path.exists(outdir+"/scancel.txt"), str(glob.glob(outdir))
+     scancel_txt = open("%s/scancel.txt" % outdir).read()
+     scancel_lines = scancel_txt.splitlines()
+     assert len(scancel_lines) == 1
+     assert scancel_lines[0].startswith("cancel")
+     assert len(scancel_lines[0].split(" ")) == 3
++    assert False, str(glob.glob(outdir))
+ 
+ 
+ @skip_on_windows
+@@ -162,6 +164,7 @@ def test_cluster_cancelscript_nargs1():
+         cleanup=False,
+         sigint_after=4,
+     )
++    assert os.path.exists(outdir+"/scancel.txt"), str(glob.glob(outdir))
+     scancel_txt = open("%s/scancel.txt" % outdir).read()
+     scancel_lines = scancel_txt.splitlines()
+     assert len(scancel_lines) == 2



View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/1d36855fcd3e176d43210ffd49c339ac0d2d4251

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/1d36855fcd3e176d43210ffd49c339ac0d2d4251
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