[med-svn] [Git][med-team/snakemake][debian-v7] Tests: ignore nocheck to get a log on riscv64.
Rebecca N. Palmer (@rnpalmer-guest)
gitlab at salsa.debian.org
Mon Aug 5 07:35:46 BST 2024
Rebecca N. Palmer pushed to branch debian-v7 at Debian Med / snakemake
Commits:
0bdd4edf by Rebecca N. Palmer at 2024-08-05T07:35:14+01:00
Tests: ignore nocheck to get a log on riscv64.
- - - - -
3 changed files:
- debian/changelog
- debian/control
- debian/rules
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+snakemake (7.32.4-4+ppa2) UNRELEASED; urgency=medium
+
+ * Tests: ignore nocheck to get a log on riscv64.
+
+ -- Rebecca N. Palmer <rebecca_palmer at zoho.com> Mon, 05 Aug 2024 07:34:15 +0100
+
snakemake (7.32.4-4+ppa1) unstable; urgency=medium
* fail tests to get a log, extra debug output
=====================================
debian/control
=====================================
@@ -12,35 +12,35 @@ Build-Depends: ca-certificates,
glpk-utils [amd64],
imagemagick,
python3,
- python3-platformdirs <!nocheck>,
- python3-biopython <!nocheck>,
- python3-boto3 <!nocheck>,
- python3-botocore <!nocheck>,
+ python3-platformdirs,
+ python3-biopython,
+ python3-boto3,
+ python3-botocore,
python3-configargparse,
python3-connection-pool,
python3-datrie,
python3-docutils,
- python3-dropbox <!nocheck>,
- python3-flask <!nocheck>,
+ python3-dropbox,
+ python3-flask,
python3-git,
python3-jinja2 (>= 3.0~),
python3-jsonschema,
python3-nbformat,
python3-packaging,
- python3-pandas <!nocheck>,
+ python3-pandas,
python3-pkg-resources,
python3-psutil,
python3-pulp (>= 2.0~),
- python3-pygments <!nocheck>,
- python3-pytest <!nocheck>,
- python3-pytools <!nocheck>,
+ python3-pygments,
+ python3-pytest,
+ python3-pytools,
python3-ratelimiter,
python3-recommonmark <!nodoc>,
python3-requests,
- python3-requests-mock <!nocheck>,
+ python3-requests-mock,
python3-retry,
- python3-pytest-mock <!nocheck>,
- python3-rpy2 <!nocheck>,
+ python3-pytest-mock,
+ python3-rpy2,
python3-setuptools,
python3-smart-open (>= 3.0~),
python3-sphinx (>= 3.0~) <!nodoc>,
@@ -49,13 +49,13 @@ Build-Depends: ca-certificates,
python3-sphinx-rtd-theme <!nodoc>,
python3-stopit,
python3-tabulate,
- python3-throttler <!nocheck>,
- python3-toposort <!nocheck>,
+ python3-throttler,
+ python3-toposort,
python3-wrapt,
python3-yaml,
- python3-yte <!nocheck>,
+ python3-yte,
r-cran-rmarkdown,
- stress <!nocheck>
+ stress
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/snakemake
Vcs-Git: https://salsa.debian.org/med-team/snakemake.git
=====================================
debian/rules
=====================================
@@ -51,7 +51,8 @@ export SPHINXBUILD=/usr/share/sphinx/scripts/python3/sphinx-build
execute_after_dh_auto_build:
PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) \
cd docs && LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 make html
- . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test || true
+ chmod +x debian/output/source_dir/bin/snakemake; cp -r debian/output/source_dir/bin debian/output/source_dir/tests debian/output/source_dir/.pybuild/cpython3_3.12_snakemake/build
+ . /etc/profile.d/modules.sh && python3.12 -m pytest -o faulthandler_timeout=60 -v debian/output/source_dir/.pybuild/cpython3_3.12_snakemake/build/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 and not test_rule_inheritance_globals and not test_prebuilt_conda_script and not test_persistent_dict and not test_issue328' || true
execute_after_dh_installdocs:
find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/0bdd4edf85dac13f42b30fb4832f746fdd486036
--
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/0bdd4edf85dac13f42b30fb4832f746fdd486036
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