[med-svn] [Git][med-team/snakemake][debian-v7] fix paths

[Rebecca N. Palmer (@rnpalmer-guest)]

Rebecca N. Palmer pushed to branch debian-v7 at Debian Med / snakemake


Commits:
00c05a5e by Rebecca N. Palmer at 2024-08-05T08:02:34+01:00
fix paths

- - - - -


2 changed files:

- debian/changelog
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,8 +1,8 @@
-snakemake (7.32.4-4+ppa2) UNRELEASED; urgency=medium
+snakemake (7.32.4-4+ppa2) unstable; urgency=medium
 
   * Tests: ignore nocheck to get a log on riscv64.
 
- -- Rebecca N. Palmer <rebecca_palmer at zoho.com>  Mon, 05 Aug 2024 07:34:15 +0100
+ -- Rebecca N. Palmer <rebecca_palmer at zoho.com>  Mon, 05 Aug 2024 08:02:27 +0100
 
 snakemake (7.32.4-4+ppa1) unstable; urgency=medium
 


=====================================
debian/rules
=====================================
@@ -51,8 +51,8 @@ export SPHINXBUILD=/usr/share/sphinx/scripts/python3/sphinx-build
 execute_after_dh_auto_build:
 	PYTHONPATH=$(shell pybuild --print build_dir --interpreter python3) \
 	cd docs && LC_ALL=C.UTF-8 LANGUAGE=C.UTF-8 make html
-	chmod +x debian/output/source_dir/bin/snakemake; cp -r debian/output/source_dir/bin debian/output/source_dir/tests debian/output/source_dir/.pybuild/cpython3_3.12_snakemake/build
-	. /etc/profile.d/modules.sh && python3.12 -m pytest -o faulthandler_timeout=60 -v debian/output/source_dir/.pybuild/cpython3_3.12_snakemake/build/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 and not test_rule_inheritance_globals and not test_prebuilt_conda_script and not test_persistent_dict and not test_issue328' || true
+	chmod +x $(shell pybuild --print build_dir --interpreter python3)/../../../bin/snakemake; cp -r $(shell pybuild --print build_dir --interpreter python3)/../../../bin $(shell pybuild --print build_dir --interpreter python3)/../../../tests $(shell pybuild --print build_dir --interpreter python3)
+	. /etc/profile.d/modules.sh && python3.12 -m pytest -o faulthandler_timeout=60 -v $(shell pybuild --print build_dir --interpreter python3)/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 and not test_rule_inheritance_globals and not test_prebuilt_conda_script and not test_persistent_dict and not test_issue328' || true
 
 execute_after_dh_installdocs:
 	find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf



View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/00c05a5ef5b5840fbd42c02d77ebe5919f2a8c7c

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/commit/00c05a5ef5b5840fbd42c02d77ebe5919f2a8c7c
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