[med-svn] [Git][med-team/python-skbio][master] 2 commits: add a new dependency on python3-statsmodels

[Alexandre Detiste (@detiste-guest)]

Alexandre Detiste pushed to branch master at Debian Med / python-skbio


Commits:
1233edd6 by Alexandre Detiste at 2024-08-12T21:56:54+02:00
add a new dependency on python3-statsmodels

- - - - -
3962a222 by Alexandre Detiste at 2024-08-12T21:58:42+02:00
remove patch applied upstream

- - - - -


3 changed files:

- debian/control
- − debian/patches/fix-test_shannon.patch
- debian/patches/series


Changes:

=====================================
debian/control
=====================================
@@ -22,6 +22,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-hdmedians,
                python3-sklearn,
                python3-natsort,
+               python3-statsmodels,
                libssw-dev,
                sphinx-common,
                libsimde-dev,


=====================================
debian/patches/fix-test_shannon.patch deleted
=====================================
@@ -1,19 +0,0 @@
-Description: relax precision on floating point number comparison.
-
-Author: Étienne Mollier <emollier at debian.org>
-Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1074745
-Forwarded: https://github.com/scikit-bio/scikit-bio/commit/edf4286dd8f69445e400fd1f2c3bacc7c5cd3f0b
-Last-Update: 2024-07-10
----
-This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
---- python-skbio.orig/skbio/diversity/alpha/tests/test_base.py
-+++ python-skbio/skbio/diversity/alpha/tests/test_base.py
-@@ -316,7 +316,7 @@
-         self.assertAlmostEqual(shannon([1, 2, 3, 4], exp=True), 3.596115467)
- 
-         # Equally abundant taxa, exp(H) = # taxa
--        self.assertEqual(shannon([5, 5, 5], exp=True), 3.0)
-+        self.assertAlmostEqual(shannon([5, 5, 5], exp=True), 3.0)
- 
-     def test_simpson(self):
-         self.assertAlmostEqual(simpson(np.array([1, 0, 2, 5, 2])), 0.66)


=====================================
debian/patches/series
=====================================
@@ -9,4 +9,3 @@ numpy-1.24.patch
 python3.12-xfail-tests.patch
 cython3.patch
 docs-no-version-switch
-fix-test_shannon.patch



View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/41ec88189a2dc28cb99cfedbd2a5c81cb379c0cf...3962a222497bc3436fb630d7dedb4151577e166a

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-skbio/-/compare/41ec88189a2dc28cb99cfedbd2a5c81cb379c0cf...3962a222497bc3436fb630d7dedb4151577e166a
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