[med-svn] [Git][med-team/python-dendropy][master] 6 commits: Add patch to drop runtime dependency on pkg_resources (Closes: #1083625)

[Ananthu C V (@weepingclown)]

Ananthu C V pushed to branch master at Debian Med / python-dendropy


Commits:
b2cb087f by Ananthu C V at 2024-12-01T18:22:51+05:30
Add patch to drop runtime dependency on pkg_resources (Closes: #1083625)

- - - - -
d625a792 by Ananthu C V at 2024-12-01T18:23:11+05:30
Bump standards version to 4.7.0 (no changes needed)

- - - - -
a7f49c44 by Ananthu C V at 2024-12-01T18:23:12+05:30
Correct patch header metadata

- - - - -
f9626b86 by Ananthu C V at 2024-12-01T18:23:13+05:30
Recreate and improve dendropy-format manpage

- - - - -
6d0528ef by Ananthu C V at 2024-12-01T18:35:11+05:30
Point homepage to the package documentation

- - - - -
51d6ad7b by Ananthu C V at 2024-12-01T18:35:12+05:30
Upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/dendropy-format.1
- debian/patches/do_not_try_running_non-existing_testsuite.patch
- + debian/patches/remove-pkg-resources-usage.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,14 @@
+python-dendropy (4.6.1-2) unstable; urgency=medium
+
+  * Team upload.
+  * Add patch to drop runtime dependency on pkg_resources (Closes: #1083625)
+  * Bump standards version to 4.7.0 (no changes needed)
+  * Correct patch header metadata
+  * Recreate and improve dendropy-format manpage
+  * Point homepage to the package documentation
+
+ -- Ananthu C V <weepingclown at disroot.org>  Sun, 01 Dec 2024 18:23:25 +0530
+
 python-dendropy (4.6.1-1) unstable; urgency=medium
 
   [ Lance Lin ]


=====================================
debian/control
=====================================
@@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3-all,
                python3-setuptools
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/python-dendropy
 Vcs-Git: https://salsa.debian.org/med-team/python-dendropy.git
-Homepage: https://dendropy.org/
+Homepage: https://jeetsukumaran.github.io/DendroPy
 Rules-Requires-Root: no
 
 Package: python3-dendropy


=====================================
debian/dendropy-format.1
=====================================
@@ -1,10 +1,9 @@
-.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
-.TH USAGE: "1" "November 2020" "usage: cat SRC-FILE | dendropy-format --from [FORMAT] --to [FORMAT] [OPTIONS] > DEST-FILE" "User Commands"
+.TH dendropy-format "1" "December 2024" "usage: dendropy-format --from [FORMAT] --to [FORMAT] [OPTIONS] <SOURCE-FILE> > DEST-FILE" "User Commands"
 .SH NAME
-usage: \- manual page for usage: cat SRC-FILE | dendropy-format --from [FORMAT] --to [FORMAT] [OPTIONS] > DEST-FILE
+dendropy-format - convert files from one format to another
 .SH DESCRIPTION
-usage: cat SRC\-FILE | dendropy\-format \fB\-\-from\fR [FORMAT] \fB\-\-to\fR [FORMAT] [OPTIONS] > DEST\-FILE
-.SS "optional arguments:"
+usage: dendropy\-format \fB\-\-from\fR [FORMAT] \fB\-\-to\fR [FORMAT] [OPTIONS] <SOURCE\-FILE> > DEST\-FILE
+.SS "options:"
 .TP
 \fB\-h\fR, \fB\-\-help\fR
 show this help message and exit
@@ -22,5 +21,10 @@ Type of data
 .TP
 \fB\-t\fR FORMAT, \fB\-\-to\fR FORMAT
 Format of data source.
-.PP
-dendropy\-format: error: the following arguments are required: source_file
+.TP
+\fB\-u\fR, \fB\-\-unquoted\-underscores\fR
+[NEXUS/Newick:] Do not quote labels with undescores.
+.TP
+\fB\-\-recode\-uncertain\fR {missing,gap}
+Recode ambiguous or uncertain characters as missing
+('?') or gaps ('\-')


=====================================
debian/patches/do_not_try_running_non-existing_testsuite.patch
=====================================
@@ -1,6 +1,6 @@
 Author: Andreas Tille <tille at debian.org>
 Forwarded: not-needed
-Last-Update: Tue, 08 Oct 2019 09:01:44 +0200
+Last-Update: 2019-10-08
 Description: There is no test suite to run - just data
  see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=937698#17
 


=====================================
debian/patches/remove-pkg-resources-usage.patch
=====================================
@@ -0,0 +1,21 @@
+Description: use importlib instead of deprecated pkg_resources
+Author: Ananthu C V <weepingclown at debian.org>
+Bug-Debian: https://bugs.debian.org/1083625
+Last-Update: 2024-12-01
+--- a/setup.py
++++ b/setup.py
+@@ -95,3 +95,2 @@
+ EXTRA_KWARGS = dict(
+-    install_requires = ['setuptools'],
+     include_package_data = True,
+--- a/src/dendropy/utility/libexec/__init__.py
++++ b/src/dendropy/utility/libexec/__init__.py
+@@ -28,6 +28,6 @@
+     try:
+-        import pkg_resources
++        from importlib.resources import files
+         # note that this creates a temporary file with the contents of the
+         # filename if the package is in an egg
+-        filepath = pkg_resources.resource_filename("dendropy", "utility/libexec/{}".format(filename))
++        filepath = files("dendropy") / "utility/libexec/{}".format(filename)
+         # print("-->{}".format(filepath))


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 do_not_try_running_non-existing_testsuite.patch
+remove-pkg-resources-usage.patch



View it on GitLab: https://salsa.debian.org/med-team/python-dendropy/-/compare/875d851f0ac2322801488c4aaa921f602a70850f...51d6ad7b8a951d858b750fcd14b04726d1de0263

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-dendropy/-/compare/875d851f0ac2322801488c4aaa921f602a70850f...51d6ad7b8a951d858b750fcd14b04726d1de0263
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