[med-svn] [Git][med-team/mirtop][master] 3 commits: Fix Python3.12 string syntax Closes: #1085726

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / mirtop


Commits:
a9c71080 by Andreas Tille at 2024-12-08T20:41:01+01:00
Fix Python3.12 string syntax Closes: #1085726

- - - - -
5c87980c by Andreas Tille at 2024-12-08T20:41:32+01:00
Standards-Version: 4.7.0 (routine-update)

- - - - -
b9f5681c by Andreas Tille at 2024-12-08T20:43:29+01:00
routine-update: Ready to upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/patches/python3.12-syntax.patch
- debian/patches/series
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+mirtop (0.4.28-2) unstable; urgency=medium
+
+  * Team upload.
+  * Fix Python3.12 string syntax
+    Closes: #1085726
+  * Standards-Version: 4.7.0 (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Sun, 08 Dec 2024 20:41:40 +0100
+
 mirtop (0.4.28-1) unstable; urgency=medium
 
   * Team Upload.


=====================================
debian/control
=====================================
@@ -16,7 +16,7 @@ Build-Depends: debhelper-compat (= 13),
                python3-pybedtools,
                python3-pandas,
                python3-biopython
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/mirtop
 Vcs-Git: https://salsa.debian.org/med-team/mirtop.git
 Homepage: https://github.com/miRTop/mirtop


=====================================
debian/patches/python3.12-syntax.patch
=====================================
@@ -0,0 +1,16 @@
+Description: Fix Python3.12 string syntax
+Bug-Debian: https://bugs.debian.org/1085726
+Author: Andreas Tille <tille at debian.org>
+Last-Update: 2024-06-08
+
+--- a/mirtop/sql/sql.py
++++ b/mirtop/sql/sql.py
+@@ -475,7 +475,7 @@ def sql_options(args):
+         if args.gff:
+             insert_sql(args)
+         else:
+-            print("Usage: mirtop sql --create --gff <input.gff> --db <new_db_name> \(Default: mirtop.db\)")
++            print("Usage: mirtop sql --create --gff <input.gff> --db <new_db_name> (Default: mirtop.db)")
+     elif args.query:
+         if args.expr:
+             #  print("Usage: mirtop sql --query --db <input_database> -e <user_query>")


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 spelling
 fix-circular-import.patch
 #pytest.patch
+python3.12-syntax.patch


=====================================
debian/tests/run-unit-test
=====================================
@@ -18,7 +18,3 @@ do
     pytest-3 -v
     
 done
-
-
-# Better testing of installed executable
-# mirtop stats -o test_out_mirs data/examples/gff/correct_file.gff



View it on GitLab: https://salsa.debian.org/med-team/mirtop/-/compare/c9a05e96a4da675bdfb2eb44e110763a85dd348d...b9f5681c002fdbfa5526e18f5e45a565ecb4cd19

-- 
View it on GitLab: https://salsa.debian.org/med-team/mirtop/-/compare/c9a05e96a4da675bdfb2eb44e110763a85dd348d...b9f5681c002fdbfa5526e18f5e45a565ecb4cd19
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