[med-svn] [Git][med-team/snippy][master] 3 commits: Build with make 4.4.1

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / snippy


Commits:
403e0ee8 by Andreas Tille at 2024-12-10T16:39:30+01:00
Build with make 4.4.1

- - - - -
de9dc102 by Andreas Tille at 2024-12-10T16:39:52+01:00
Standards-Version: 4.7.0 (routine-update)

- - - - -
4d4cd21c by Andreas Tille at 2024-12-10T16:42:43+01:00
routine-update: Ready to upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/make-4.4.1.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+snippy (4.6.0+dfsg-5) unstable; urgency=medium
+
+  * Build with make 4.4.1
+    Closes: #1089272
+  * Standards-Version: 4.7.0 (routine-update)
+
+ -- Andreas Tille <tille at debian.org>  Tue, 10 Dec 2024 16:40:07 +0100
+
 snippy (4.6.0+dfsg-4) unstable; urgency=medium
 
   * Work with snpeff >= 5.1


=====================================
debian/control
=====================================
@@ -19,7 +19,7 @@ Build-Depends: debhelper-compat (= 13),
                snp-sites <!nocheck>,
                snpeff <!nocheck>,
                vt <!nocheck>
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/snippy
 Vcs-Git: https://salsa.debian.org/med-team/snippy.git
 Homepage: https://github.com/tseemann/snippy/


=====================================
debian/patches/make-4.4.1.patch
=====================================
@@ -0,0 +1,18 @@
+Description: Build with make 4.4.1
+Author: Andreas Tille <tille at debian.org>
+Bug-Debian: https://bugs.debian.org/1089272
+Last-Update: 2024-12-10
+
+--- a/test/Makefile
++++ b/test/Makefile
+@@ -34,8 +34,8 @@ core.txt : S1/snps.tab S2/snps.tab S3/sn
+ %/R1.fq %/R2.fq : $(REF)
+ 	mkdir -p $(@D)
+ 	$(WGSIM) -S $(shell echo $(@D) | sed 's/[^0-9]//g') \
+-		 -h -r 0.005 -N 12000 -1 100 -2 100 -d 200 \
+-		 $< $@ $(subst R2,R1,$@) > $(@D)/dwgsim.tab
++	         -h -r 0.005 -N 12000 -1 100 -2 100 -d 200 \
++	         $< $(@D)/R1.fq $(@D)/R2.fq > $(@D)/dwgsim.tab
+ 
+ %.fna : %.gbk
+ 	any2fasta -n -u $< > $@


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 debian_packaged_libs.patch
 snpeff.config.patch
 snpeff_v5.1+.patch
+make-4.4.1.patch



View it on GitLab: https://salsa.debian.org/med-team/snippy/-/compare/a422d135aaf06b7a1ee60bd3d7c4d2441f50e5c7...4d4cd21c152ca6d315fc0c5545d3581762b397d0

-- 
View it on GitLab: https://salsa.debian.org/med-team/snippy/-/compare/a422d135aaf06b7a1ee60bd3d7c4d2441f50e5c7...4d4cd21c152ca6d315fc0c5545d3581762b397d0
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20241210/5bf3bd85/attachment-0001.htm>