[med-svn] [Git][med-team/ncbi-vdb][upstream] New upstream version 3.1.1+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / ncbi-vdb


Commits:
aa936e09 by Andreas Tille at 2024-12-12T09:55:39+01:00
New upstream version 3.1.1+dfsg
- - - - -


30 changed files:

- CHANGES.md
- build/Makefile.vers
- build/env.cmake
- build/install-root.sh
- interfaces/kdb/consistency-check.h
- interfaces/kdb/manager.h
- interfaces/klib/vdb_release_version.h
- interfaces/kns/http.h
- interfaces/kns/socket.h
- + interfaces/os/bsd/byteswap.h
- + interfaces/os/bsd/endian.h
- + interfaces/os/bsd/os-native.h
- interfaces/vdb/vdb-priv.h
- interfaces/vfs/services-priv.h
- libs/CMakeLists.txt
- libs/align/al_iterator.c
- libs/align/align-access.c
- libs/align/bam.c
- libs/align/pl_iterator.c
- libs/align/reader-refseq.c
- libs/align/reader-wgs.c
- libs/align/reader-wgs.h
- libs/align/ref_iterator.c
- libs/align/reference-cmn.c
- libs/align/reference.c
- libs/align/refseq-mgr.c
- libs/align/samextract-bam.cpp
- libs/align/samextract-lib.cpp
- libs/align/samextract.h
- libs/align/unsupported_pileup_estimator.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/commit/aa936e09507921c92789ed060dedfeeacea69dee

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View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/commit/aa936e09507921c92789ed060dedfeeacea69dee
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