[med-svn] [Git][med-team/deblur][master] release

[Alexandre Detiste (@detiste-guest)]

Alexandre Detiste pushed to branch master at Debian Med / deblur


Commits:
9dea3217 by Alexandre Detiste at 2024-12-14T18:26:13+01:00
release

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+deblur (1.1.1-3) unstable; urgency=medium
+
+  * Team upload.
+  * Replace python3-nose usage with python3-pytest,
+    enable half of the tests.
+    (see "Tests are disable until the sortmerna situation is fixed")
+
+ -- Alexandre Detiste <tchet at debian.org>  Sat, 28 Sep 2024 01:16:42 +0200
+
 deblur (1.1.1-2) unstable; urgency=medium
 
   * Team upload. Closes: #1081575


=====================================
debian/control
=====================================
@@ -3,12 +3,15 @@ Section: science
 Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Steffen Moeller <moeller at debian.org>
-Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all,
+Build-Depends: debhelper-compat (= 13),
+               dh-sequence-python3,
+               python3-setuptools,
+               python3-all,
                python3-skbio,
                python3-biom-format,
+               python3-pytest <!nocheck>,
                sortmerna (>> 4~),
                vsearch,
-               python3-nose <!nocheck>,
                mafft <!nocheck>
 Standards-Version: 4.7.0
 Homepage: https://github.com/biocore/deblur


=====================================
debian/rules
=====================================
@@ -1,11 +1,24 @@
 #!/usr/bin/make -f
-# See debhelper(7) (uncomment to enable)
-# output every command that modifies files on the build system.
+
 #export DH_VERBOSE = 1
 
 export PYBUILD_NAME=deblur
-export PYBUILD_TEST_NOSE=1
-export PYBUILD_DISABLE=test
+export PYBUILD_BEFORE_TEST=cp -Rv {dir}/deblur/test/data {build_dir}/deblur/test
+export PYBUILD_TEST_ARGS=deblur/test/test_*.py -k ' \
+                                                        not test_workflow \
+                                                    and not test_parallel_deblur \
+                                                    and not test_workflow \
+                                                    and not test_build_index_sortmerna \
+                                                    and not test_build_index_sortmerna_fail \
+                                                    and not test_launch_workflow \
+                                                    and not test_launch_workflow_incorrect_trim \
+                                                    and not test_launch_workflow_skip_trim \
+                                                    and not test_remove_artifacts_from_biom_table \
+                                                    and not test_remove_artifacts_seqs \
+                                                    and not test_remove_artifacts_seqs_index_prebuilt \
+                                                    and not test_remove_artifacts_seqs_negate \
+                                             '
+
 
 %:
 	dh $@ --buildsystem=pybuild



View it on GitLab: https://salsa.debian.org/med-team/deblur/-/commit/9dea3217d0e00cfd0c1015477494157528cebca2

-- 
View it on GitLab: https://salsa.debian.org/med-team/deblur/-/commit/9dea3217d0e00cfd0c1015477494157528cebca2
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20241214/68124b43/attachment-0001.htm>