[med-svn] [Git][med-team/fast5][master] New patch hdf5-1.14.patch: set -DH5_USE_110_API into src/Makefile as well, to fix autopkgtest

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / fast5


Commits:
cbe268f1 by Andreas Tille at 2024-12-31T18:43:31+01:00
New patch hdf5-1.14.patch: set -DH5_USE_110_API into src/Makefile as well, to fix autopkgtest

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/hdf5-1.14.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+fast5 (0.6.5-9) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * New patch hdf5-1.14.patch: set -DH5_USE_110_API into src/Makefile
+    as well, to fix autopkgtest
+    Closes: #1090898
+
+ -- Gilles Filippini <pini at debian.org>  Sat, 21 Dec 2024 22:43:21 +0100
+
 fast5 (0.6.5-8) unstable; urgency=medium
 
   * d/control: set CPPFLAGS to add -DH5_USE_110_API.


=====================================
debian/patches/hdf5-1.14.patch
=====================================
@@ -0,0 +1,18 @@
+Author: Gilles Filippini <pini at debian.org>
+Last-Update; 2024-12-21
+Bug-Debian: https://bugs.debian.org/1090898
+Description: Adapt to HDF5 1.14
+
+Index: fast5-0.6.5/src/Makefile
+===================================================================
+--- fast5-0.6.5.orig/src/Makefile
++++ fast5-0.6.5/src/Makefile
+@@ -24,7 +24,7 @@ EXTRA_TARGETS = f5dump f5pack
+ HPP_FILES := $(addprefix ${FAST5_DIR}/, fast5.hpp fast5/hdf5_tools.hpp fast5/Huffman_Packer.hpp fast5/Bit_Packer.hpp)
+ 
+ CXXFLAGS += -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic
+-CPPFLAGS += -isystem ${HDF5_INCLUDE_DIR} -I $(FAST5_DIR)
++CPPFLAGS += -isystem ${HDF5_INCLUDE_DIR} -I $(FAST5_DIR) -DH5_USE_110_API
+ EXTRA_CPPFLAGS := -isystem ${TCLAP_DIR}/include -I ${HPPTOOLS_DIR}/include
+ LDFLAGS += -L${HDF5_LIB_DIR} -Wl,--rpath=${HDF5_LIB_DIR} -l${HDF5_LIB} -lpthread -lz -ldl
+ 


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
 rpath.patch
 gcc-12.patch
 build-flags.patch
+hdf5-1.14.patch



View it on GitLab: https://salsa.debian.org/med-team/fast5/-/commit/cbe268f18962945ea0a882197fb29f1818368d42

-- 
View it on GitLab: https://salsa.debian.org/med-team/fast5/-/commit/cbe268f18962945ea0a882197fb29f1818368d42
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