[med-svn] [Git][med-team/q2-demux][upstream] New upstream version 2024.2.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / q2-demux


Commits:
2e4aaca5 by Andreas Tille at 2024-02-18T14:48:37+01:00
New upstream version 2024.2.0+dfsg
- - - - -


5 changed files:

- .github/workflows/ci-dev.yaml
- README.md
- ci/recipe/meta.yaml
- q2_demux/_version.py
- q2_demux/tests/test_demux.py


Changes:

=====================================
.github/workflows/ci-dev.yaml
=====================================
@@ -9,4 +9,4 @@ jobs:
   ci:
     uses: qiime2/distributions/.github/workflows/lib-ci-dev.yaml at dev
     with:
-      distro: core
\ No newline at end of file
+      distro: amplicon


=====================================
README.md
=====================================
@@ -1,5 +1,5 @@
 # q2-demux
 
-![](https://github.com/qiime2/q2-demux/workflows/ci/badge.svg)
+![](https://github.com/qiime2/q2-demux/workflows/ci-dev/badge.svg)
 
 This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org.
\ No newline at end of file


=====================================
ci/recipe/meta.yaml
=====================================
@@ -49,7 +49,7 @@ test:
     - qiime2.plugins.demux
 
   commands:
-    - py.test --pyargs q2_demux  
+    - py.test --pyargs q2_demux
 
 about:
   home: https://qiime2.org


=====================================
q2_demux/_version.py
=====================================
@@ -23,9 +23,9 @@ def get_keywords():
     # setup.py/versioneer.py will grep for the variable names, so they must
     # each be defined on a line of their own. _version.py will just call
     # get_keywords().
-    git_refnames = " (tag: 2023.9.1, Release-2023.9)"
-    git_full = "09097f551d09f026b295962441e90b80c0e5ce81"
-    git_date = "2023-10-24 18:43:25 +0000"
+    git_refnames = " (tag: 2024.2.0, Release-2024.2)"
+    git_full = "9e6af01fb0eff039b221f95ee596238f96a3b134"
+    git_date = "2024-02-16 21:56:22 +0000"
     keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
     return keywords
 


=====================================
q2_demux/tests/test_demux.py
=====================================
@@ -19,7 +19,7 @@ import skbio
 import qiime2
 import numpy.testing as npt
 
-from qiime2.plugin.testing import TestPluginBase
+from qiime2.plugin.testing import TestPluginBase, assert_no_nans_in_tables
 from q2_demux._demux import (BarcodeSequenceFastqIterator,
                              BarcodePairedSequenceFastqIterator)
 from q2_demux import (emp_single, emp_paired, partition_samples_single,
@@ -1269,6 +1269,7 @@ class SummarizeTests(TestPluginBase):
             self.assertTrue(os.path.exists(qual_forward_fp))
             self.assertTrue(os.path.getsize(qual_forward_fp) > 0)
             with open(index_fp, 'r') as fh:
+                assert_no_nans_in_tables(fh)
                 html = fh.read()
                 self.assertIn('<th>Minimum</th>\n      <td>1</td>', html)
                 self.assertIn('<th>Maximum</th>\n      <td>3</td>', html)
@@ -1305,6 +1306,7 @@ class SummarizeTests(TestPluginBase):
             png_fp = os.path.join(output_dir, 'demultiplex-summary.png')
             self.assertFalse(os.path.exists(png_fp))
             with open(index_fp, 'r') as fh:
+                assert_no_nans_in_tables(fh)
                 html = fh.read()
                 self.assertIn('<th>Minimum</th>\n      <td>1</td>', html)
                 self.assertIn('<th>Maximum</th>\n      <td>1</td>', html)



View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/commit/2e4aaca52b167c4b761aa6305d2bda63f789306b

-- 
View it on GitLab: https://salsa.debian.org/med-team/q2-demux/-/commit/2e4aaca52b167c4b761aa6305d2bda63f789306b
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