[med-svn] [Git][med-team/macsyfinder][master] 4 commits: routine-update: New upstream version

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / macsyfinder


Commits:
6f42260d by Michael R. Crusoe at 2024-02-29T15:37:48+01:00
routine-update: New upstream version

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2a792178 by Michael R. Crusoe at 2024-02-29T16:01:59+01:00
New upstream version 2.1.3
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e4d87b91 by Michael R. Crusoe at 2024-02-29T16:02:00+01:00
Mark patches as not needing forwarding upstream.

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bdca4a7c by Michael R. Crusoe at 2024-02-29T16:02:00+01:00
routine-update: Ready to upload to unstable

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30 changed files:

- + .readthedocs.yaml
- README.md
- + codemeta.json
- debian/changelog
- debian/patches/do_not_test_parse_model_old_syntax.patch
- debian/patches/fix-test-parse.patch
- debian/patches/skip_failing_test.patch
- + doc/requirements.txt
- doc/source/conf.py
- doc/source/modeler_guide/package.rst
- doc/source/user_guide/gembase_convention.rst
- doc/source/user_guide/input.rst
- doc/source/user_guide/new_v2.rst
- macsypy/__init__.py
- macsypy/database.py
- macsypy/error.py
- macsypy/profile.py
- macsypy/registries.py
- macsypy/scripts/macsyfinder.py
- setup.cfg
- + tests/data/base/test_3.fasta.gz
- + tests/data/functional_test_gzip/all_best_solutions.tsv
- + tests/data/functional_test_gzip/all_systems.tsv
- + tests/data/functional_test_gzip/all_systems.txt
- + tests/data/functional_test_gzip/best_solution.tsv
- + tests/data/functional_test_gzip/best_solution_loners.tsv
- + tests/data/functional_test_gzip/best_solution_multisystems.tsv
- + tests/data/functional_test_gzip/best_solution_summary.tsv
- + tests/data/functional_test_gzip/hmmer_results/T1SS_abc.res_hmm_extract
- + tests/data/functional_test_gzip/hmmer_results/T1SS_abc.search_hmm.err


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/compare/4cb76f366949bb19e6f478d0e54323d5a3985968...bdca4a7c889e0ac8694deb6532297b1fa900cfae

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View it on GitLab: https://salsa.debian.org/med-team/macsyfinder/-/compare/4cb76f366949bb19e6f478d0e54323d5a3985968...bdca4a7c889e0ac8694deb6532297b1fa900cfae
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