[med-svn] [Git][med-team/plink1-9][master] 2 commits: Do not Build-Depends on atlas

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / plink1.9


Commits:
e8c4bba6 by Andreas Tille at 2024-01-11T16:15:49+01:00
Do not Build-Depends on atlas

- - - - -
56b6a54e by Andreas Tille at 2024-01-11T16:26:21+01:00
Do not try to link against atlas

- - - - -


4 changed files:

- debian/changelog
- debian/control
- + debian/patches/blas.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+plink1.9 (1.90~b6.26-220402-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * Do not Build-Depends on atlas
+    Closes: #1056682
+
+ -- Andreas Tille <tille at debian.org>  Thu, 11 Jan 2024 16:14:58 +0100
+
 plink1.9 (1.90~b6.26-220402-1) unstable; urgency=medium
 
   * New upstream release.


=====================================
debian/control
=====================================
@@ -4,8 +4,8 @@ Uploaders: Dylan Aïssi <daissi at debian.org>
 Section: science
 Priority: optional
 Build-Depends: debhelper-compat (= 13),
-               libatlas-base-dev,
-               liblapack-dev,
+               libblas-dev | libblas.so,
+               liblapack-dev | liblapack.so,
                zlib1g-dev
 Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/med-team/plink1-9
@@ -17,6 +17,7 @@ Package: plink1.9
 Architecture: any-amd64 any-i386 armel armhf mipsel
 Depends: ${misc:Depends},
          ${shlibs:Depends}
+Recommends: libopenblas0 | libblis4
 Description: whole-genome association analysis toolset
  plink expects as input the data from SNP (single nucleotide polymorphism)
  chips of many individuals and their phenotypical description of a disease.


=====================================
debian/patches/blas.patch
=====================================
@@ -0,0 +1,16 @@
+Description: Do not try to link against atlas
+Bug-Debian: https://bugs.debian.org/1056682
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 11 Jan 2024 16:14:58 +0100
+
+--- a/Makefile
++++ b/Makefile
+@@ -62,7 +62,7 @@ ifeq ($(SYS), WIN)
+ endif
+ 
+ # These must appear after the MAC/WIN-specific ?= statements.
+-BLASFLAGS ?=	-L/usr/lib64/atlas -llapack -lblas -lcblas -latlas
++BLASFLAGS ?=	-llapack -lblas
+ LDFLAGS ?=	-lm -lpthread -ldl
+ ZLIB ?=		-L. ../zlib-1.2.11/libz.so.1.2.11
+ 


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 fix_makefile.patch
+blas.patch



View it on GitLab: https://salsa.debian.org/med-team/plink1-9/-/compare/a32b0f06fc374a959b0e852a42e06bd9f4fa8ce5...56b6a54e7992f3adbd013f0c5e8c22f0caf07f1b

-- 
View it on GitLab: https://salsa.debian.org/med-team/plink1-9/-/compare/a32b0f06fc374a959b0e852a42e06bd9f4fa8ce5...56b6a54e7992f3adbd013f0c5e8c22f0caf07f1b
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