[med-svn] [Git][med-team/ghmm][master] 3 commits: Added Makefile to run working upstream tests

[Israel Komolehin (@Komolehin)]

Israel Komolehin pushed to branch master at Debian Med / ghmm


Commits:
05107096 by Komolehin Israel Timilehin at 2024-01-18T17:29:32+00:00
Added Makefile to run working upstream tests

- - - - -
5db04538 by Komolehin Israel Timilehin at 2024-01-18T17:31:03+00:00
Updated README with list of missing files in libghmm

- - - - -
7915b392 by Komolehin Israel Timilehin at 2024-01-18T17:34:25+00:00
Updated ghmm.examples

- - - - -


4 changed files:

- debian/ghmm.examples
- + debian/tests/Makefile
- debian/tests/README.md
- debian/tests/run-unit-test


Changes:

=====================================
debian/ghmm.examples
=====================================
@@ -1,3 +1,2 @@
-debian/tests/*.c
 debian/tests/*.py
-
+tests/*.c


=====================================
debian/tests/Makefile
=====================================
@@ -0,0 +1,35 @@
+CC=gcc
+CFLAGS=-I/usr/include/ghmm
+LDFLAGS=-lghmm -llapack
+
+
+all: test_label_higher_order test_two_states_three_symbols test_libxml test_read_fa test_sequences 
+
+test_label_higher_order: label_higher_order_test.o
+	$(CC) $^ -o $@ $(LDFLAGS) -lm
+
+test_two_states_three_symbols: two_states_three_symbols.o
+	$(CC) $^ -o $@ $(LDFLAGS)
+
+test_libxml: libxml-test.o
+	$(CC) $^ -o $@ $(LDFLAGS)
+
+test_read_fa: read_fa.o
+	$(CC) $^ -o $@ $(LDFLAGS)
+
+test_sequences: sequences_test.o
+	$(CC) $^ -o $@ $(LDFLAGS)
+
+%.o: %.c
+	$(CC) -c $< -o $@ $(CFLAGS)
+
+clean:
+	rm -f *.o test_two_sates_three_symbols test_libxml
+
+run: all
+	./test_label_higher_order
+	./test_two_states_three_symbols
+	./test_libxml
+	./test_sequences
+	# read_fa needs seqence and model to be passed as arguments
+	# ./test_read_fa 
\ No newline at end of file


=====================================
debian/tests/README.md
=====================================
@@ -2,10 +2,16 @@
 
 Test in python can be referenced [here](https://ghmm.sourceforge.net/documentation.html)
 
-## Executed command
-`python3 ghmm_test.py`
 
-  NameError: name 'IntegerRange' is not defined
+## Executed commands
 
 
+#### Error
 
+##### Missing files in installed libghmm. These missing files are blockers for some tests
+
+-   `ghmm/matrix.h`
+-   `ghmm/matrixop.h`
+-   `ghmm_internals.h`
+-   `randvar.h`
+-   `mes.h`
\ No newline at end of file


=====================================
debian/tests/run-unit-test
=====================================
@@ -10,11 +10,10 @@ if [ "$AUTOPKGTEST_TMP" = "" ]; then
 fi
 
 cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
-cd $AUTOPKGTEST_TMP
+cp -a debian/tests/Makefile "${AUTOPKGTEST_TMP}"
 
-gcc -c ghmm_test.c -o ghmm_test.o -I/usr/include/ghmm
-gcc ghmm_test.o -o ghmm_test -lghmm -llapack
+cd $AUTOPKGTEST_TMP
 
-./ghmm_test
+make run
 
-python3 ghmm_test.py
+python3 ghmm_test.py
\ No newline at end of file



View it on GitLab: https://salsa.debian.org/med-team/ghmm/-/compare/2845f134775c316423398c158fc93f842709a179...7915b392555252ac5ff82bb01fe3e81549ab2c0f

-- 
View it on GitLab: https://salsa.debian.org/med-team/ghmm/-/compare/2845f134775c316423398c158fc93f842709a179...7915b392555252ac5ff82bb01fe3e81549ab2c0f
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20240118/2c6f9c20/attachment-0001.htm>