[med-svn] [Git][med-team/toil][master] 8 commits: Drop python3-boto from (Build-/Test-)Depends since upstream considers this module optional

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / toil


Commits:
f5b66a9c by Andreas Tille at 2024-01-23T09:00:05+01:00
Drop python3-boto from (Build-/Test-)Depends since upstream considers this module optional

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3ba692b0 by Andreas Tille at 2024-01-23T09:00:23+01:00
routine-update: New upstream version

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97bd5a13 by Andreas Tille at 2024-01-23T09:00:24+01:00
New upstream version 6.0.0
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305607bf by Andreas Tille at 2024-01-23T09:00:31+01:00
Update upstream source from tag 'upstream/6.0.0'

Update to upstream version '6.0.0'
with Debian dir 6f2b5629cb08602477c91a6801795fecb7a09fb7
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5a78c130 by Andreas Tille at 2024-01-23T09:21:41+01:00
Refresh patches

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7a814452 by Andreas Tille at 2024-01-23T10:29:06+01:00
Build-Depends: python3-configargparse

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5612d3fb by Andreas Tille at 2024-01-23T11:12:31+01:00
Soften versioned dependency from cwltool

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1d71375e by Andreas Tille at 2024-01-23T11:12:47+01:00
Try adding http_proxy='127.0.0.1:9'  to doc creation but this does not seem to help

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30 changed files:

- .github/workflows/codeql-analysis.yml
- .gitlab-ci.yml
- Makefile
- attic/README.md
- attic/toil-sort-example.py
- common.mk
- contrib/admin/cleanup_aws_resources.py
- contrib/admin/mypy-with-ignore.py
- + contrib/mypy-stubs/configargparse/__init__.pyi
- + contrib/mypy-stubs/configargparse/configargparse.pyi
- contrib/slurm-test/slurm_test.sh
- − contrib/tes/funnel/kubernetes/setup.yml
- contrib/toil-ci-prebake/Dockerfile
- debian/changelog
- debian/control
- debian/patches/atomic_copy_as_alternative.patch
- debian/patches/avoid_boto
- debian/patches/debianize_docs
- − debian/patches/fewer_cores
- debian/patches/no_galaxy_lib
- debian/patches/python3_in_doc.patch
- debian/patches/series
- − debian/patches/skip_py_tes_dep
- + debian/patches/soften-cwltool-dep.patch
- debian/patches/soften-mesos-deps
- debian/patches/soften-pydocker-dep
- debian/rules
- debian/tests/control
- docker/Dockerfile.py
- docs/Makefile


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/1dd26b530492e0e8369e18030b8f7fd10f174119...1d71375e81a55d1057ef2d40bdbcaf97731b72ae

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/1dd26b530492e0e8369e18030b8f7fd10f174119...1d71375e81a55d1057ef2d40bdbcaf97731b72ae
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