[med-svn] [Git][med-team/toil][upstream] New upstream version 6.0.0

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / toil


Commits:
97bd5a13 by Andreas Tille at 2024-01-23T09:00:24+01:00
New upstream version 6.0.0
- - - - -


30 changed files:

- .github/workflows/codeql-analysis.yml
- .gitlab-ci.yml
- Makefile
- attic/README.md
- attic/toil-sort-example.py
- common.mk
- contrib/admin/cleanup_aws_resources.py
- contrib/admin/mypy-with-ignore.py
- + contrib/mypy-stubs/configargparse/__init__.pyi
- + contrib/mypy-stubs/configargparse/configargparse.pyi
- contrib/slurm-test/slurm_test.sh
- − contrib/tes/funnel/kubernetes/setup.yml
- contrib/toil-ci-prebake/Dockerfile
- docker/Dockerfile.py
- docs/Makefile
- docs/appendices/architecture.rst
- docs/appendices/deploy.rst
- docs/appendices/environment_vars.rst
- docs/conf.py
- docs/contributing/contributing.rst
- + docs/cwl/introduction.rst
- docs/running/cwl.rst → docs/cwl/running.rst
- docs/gettingStarted/install.rst
- docs/gettingStarted/quickStart.rst
- docs/index.rst
- docs/developingWorkflows/developing.rst → docs/python/developing.rst
- docs/developingWorkflows/toilAPI.rst → docs/python/toilAPI.rst
- docs/developingWorkflows/toilAPIBatchsystem.rst → docs/python/toilAPIBatchsystem.rst
- docs/developingWorkflows/toilAPIExceptions.rst → docs/python/toilAPIExceptions.rst
- docs/developingWorkflows/toilAPIFilestore.rst → docs/python/toilAPIFilestore.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/97bd5a13dee050276d2fd422b405b571b501be22

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