[med-svn] [Git][med-team/bio-tradis][master] 10 commits: Fix watch file
Andreas Tille (@tille)
gitlab at salsa.debian.org
Thu Jan 25 14:37:48 GMT 2024
Andreas Tille pushed to branch master at Debian Med / bio-tradis
Commits:
7d1d0711 by Andreas Tille at 2024-01-25T15:02:37+01:00
Fix watch file
- - - - -
9864c756 by Andreas Tille at 2024-01-25T15:04:26+01:00
Fix clean target
- - - - -
2b62d57f by Andreas Tille at 2024-01-25T15:04:41+01:00
routine-update: Standards-Version: 4.6.2
- - - - -
0a363dc9 by Andreas Tille at 2024-01-25T15:04:41+01:00
routine-update: debhelper-compat 13
- - - - -
4afadab2 by Andreas Tille at 2024-01-25T15:04:45+01:00
routine-update: Add salsa-ci file
- - - - -
8c59493a by Andreas Tille at 2024-01-25T15:04:46+01:00
routine-update: Rules-Requires-Root: no
- - - - -
2f3c1d5a by Andreas Tille at 2024-01-25T15:04:53+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
- - - - -
f1f9d0cc by Andreas Tille at 2024-01-25T15:27:21+01:00
dh_install now works even without debian/install
- - - - -
9aad83b7 by Andreas Tille at 2024-01-25T15:32:55+01:00
* r-bioc-edger is back in Debian thus move it to Recommends and
drop the outdated debian/NEWS
* artemis is available now thus move it to Recommends
- - - - -
6a14c8a4 by Andreas Tille at 2024-01-25T15:37:18+01:00
Upload to unstable
- - - - -
8 changed files:
- − debian/NEWS
- debian/changelog
- + debian/clean
- debian/control
- − debian/install
- + debian/salsa-ci.yml
- debian/upstream/metadata
- debian/watch
Changes:
=====================================
debian/NEWS deleted
=====================================
@@ -1,11 +0,0 @@
-bio-tradis (1.3.3+dfsg-3) unstable; urgency=medium
-
- The package r-bioc-edger was removed from Debian since it was severely
- Outdated. An upgrade is not possible since recent version of BioConductor
- Edger can not be distributed by Debian since it is using non-distributable
- Code locfit.
-
- Thus you need to manually install Edger in your R environment.
-
- -- Andreas Tille <tille at debian.org> Mon, 12 Feb 2018 15:05:27 +0100
-
=====================================
debian/changelog
=====================================
@@ -1,3 +1,20 @@
+bio-tradis (1.4.5+dfsg2-2) unstable; urgency=medium
+
+ * Fix watch file
+ * Fix clean target
+ Closes: #1043774
+ * Standards-Version: 4.6.2 (routine-update)
+ * debhelper-compat 13 (routine-update)
+ * Add salsa-ci file (routine-update)
+ * Rules-Requires-Root: no (routine-update)
+ * Set upstream metadata fields: Bug-Database, Bug-Submit.
+ * dh_install now works even without debian/install
+ * r-bioc-edger is back in Debian thus move it to Recommends and
+ drop the outdated debian/NEWS
+ * artemis is available now thus move it to Recommends
+
+ -- Andreas Tille <tille at debian.org> Thu, 25 Jan 2024 15:34:52 +0100
+
bio-tradis (1.4.5+dfsg2-1) unstable; urgency=medium
* Team upload.
=====================================
debian/clean
=====================================
@@ -0,0 +1,4 @@
+expected.*.nohead.mapped
+mapped.nohead.out
+output.fastq
+test.plot.unzipped
=====================================
debian/control
=====================================
@@ -4,7 +4,7 @@ Uploaders: Andreas Tille <tille at debian.org>
Section: perl
# Testsuite: autopkgtest-pkg-perl
Priority: optional
-Build-Depends: debhelper-compat (= 12)
+Build-Depends: debhelper-compat (= 13)
Build-Depends-Indep: libbio-perl-perl,
libenv-path-perl,
libexception-class-perl,
@@ -20,10 +20,11 @@ Build-Depends-Indep: libbio-perl-perl,
smalt,
tabix,
bwa
-Standards-Version: 4.4.1
+Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/bio-tradis
Vcs-Git: https://salsa.debian.org/med-team/bio-tradis.git
Homepage: https://github.com/sanger-pathogens/Bio-Tradis
+Rules-Requires-Root: no
Package: bio-tradis
Architecture: all
@@ -40,8 +41,8 @@ Depends: ${misc:Depends},
r-base-core,
r-cran-getopt,
r-cran-mass
-Suggests: artemis,
- r-bioc-edger
+Recommends: artemis,
+ r-bioc-edger
Description: analyse the output from TraDIS analyses of genomic sequences
Bio-Tradis contains a set of tools to analyse the output from
TraDIS analyses.
=====================================
debian/install deleted
=====================================
@@ -1,2 +0,0 @@
-lib/Bio usr/share/perl5
-bin usr
=====================================
debian/salsa-ci.yml
=====================================
@@ -0,0 +1,4 @@
+---
+include:
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
+ - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
=====================================
debian/upstream/metadata
=====================================
@@ -1,4 +1,6 @@
Archive: CPAN
+Bug-Database: https://github.com/sanger-pathogens/Bio-Tradis/issues
+Bug-Submit: https://github.com/sanger-pathogens/Bio-Tradis/issues/new
Reference:
Author: "Lars Barquist and Matthew Mayho and Carla Cummins and Amy K. Cain and Christine\
\ J. Boinett and Andrew J. Page and Gemma C. Langridge and Michael A. Quail and\
=====================================
debian/watch
=====================================
@@ -1,3 +1,3 @@
version=4
-opts="uversionmangle=s/^1.1/1.1./,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \
+opts="uversionmangle=s/^1.1/1.1./,repacksuffix=+dfsg,dversionmangle=auto,repack,compression=xz" \
https://metacpan.org/release/Bio-Tradis .*/Bio-Tradis-v?@ANY_VERSION@@ARCHIVE_EXT@$
View it on GitLab: https://salsa.debian.org/med-team/bio-tradis/-/compare/039ffb650083bfffffab050f1925fe56e37067b5...6a14c8a48dd0307eaa1f8ef8e80f500b2e90815b
--
View it on GitLab: https://salsa.debian.org/med-team/bio-tradis/-/compare/039ffb650083bfffffab050f1925fe56e37067b5...6a14c8a48dd0307eaa1f8ef8e80f500b2e90815b
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