[med-svn] [Git][med-team/python-cogent][master] 4 commits: Fix patch to skip some tests which was lacking `import multiprocessing`

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-cogent


Commits:
78516e78 by Andreas Tille at 2024-01-26T15:08:40+01:00
Fix patch to skip some tests which was lacking `import multiprocessing`

- - - - -
639ebe70 by Andreas Tille at 2024-01-26T15:33:39+01:00
Close bug

- - - - -
3b97858e by Andreas Tille at 2024-01-26T15:35:53+01:00
Skip another test that is accessing network

- - - - -
b6252843 by Andreas Tille at 2024-01-26T15:51:24+01:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/patches/ignore_tests_accessing_network.patch
- debian/patches/skip-parallel-tests-on-single-cpu-systems.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,14 +1,15 @@
-python-cogent (2023.12.15a1+dfsg-1) UNRELEASED; urgency=medium
+python-cogent (2023.12.15a1+dfsg-1) unstable; urgency=medium
 
   * New upstream version
+    Closes: #1058370
   * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
   * Build-Depends: python3-sphinxcontrib.bibtex, python3-sphinx-design,
     python3-pydata-sphinx-theme
   * Add build support for loongarch64
     Closes: #1059557
-  TODO: Wait for working numba
+  * Fix patch to skip some tests which was lacking `import multiprocessing`
 
- -- Andreas Tille <tille at debian.org>  Sat, 16 Dec 2023 22:25:27 +0100
+ -- Andreas Tille <tille at debian.org>  Fri, 26 Jan 2024 15:36:11 +0100
 
 python-cogent (2023.2.12a1+dfsg-4) unstable; urgency=medium
 


=====================================
debian/patches/ignore_tests_accessing_network.patch
=====================================
@@ -36,3 +36,13 @@ Description: Ignore some tests that try to access network
  def test_open_url_exceptions():
      """non-http(s) address for url (should raise Exception)"""
      with pytest.raises(Exception):
+--- a/tests/test_app/test_evo.py
++++ b/tests/test_app/test_evo.py
+@@ -870,6 +870,7 @@ def test_model_opt_args():
+     assert model._opt_args == {**opt_args, **{"show_progress": False}}
+ 
+ 
++ at pytest.mark.skip(reason="Do not test in Debian since offline")
+ def test_get_app_tree_is_url():
+     """A check that the model app can use a url for the tree"""
+     tree_url = "https://raw.githubusercontent.com/cogent3/cogent3/develop/tests/data/brca1_5.tree"


=====================================
debian/patches/skip-parallel-tests-on-single-cpu-systems.patch
=====================================
@@ -31,7 +31,7 @@ Description: Skip parallel tests on single-cpu systems
          """
 --- a/tests/test_app/test_evo.py
 +++ b/tests/test_app/test_evo.py
-@@ -2,7 +2,7 @@ import pathlib
+@@ -2,10 +2,11 @@ import pathlib
  
  from os.path import dirname, join
  from tempfile import TemporaryDirectory
@@ -40,7 +40,11 @@ Description: Skip parallel tests on single-cpu systems
  from unittest.mock import MagicMock
  
  import pytest
-@@ -846,6 +846,7 @@ class TestBootstrap(TestCase):
++import multiprocessing
+ 
+ from numpy.testing import assert_allclose, assert_raises
+ 
+@@ -846,6 +847,7 @@ class TestBootstrap(TestCase):
              _ = io.load_db() + evo_app.bootstrap(hyp, num_reps=2) + writer
  
  



View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/68f2ea53a01190b9456a2f7f27e3b750113343b3...b6252843b895ac0ae2dd14abf99a53985560343f

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-cogent/-/compare/68f2ea53a01190b9456a2f7f27e3b750113343b3...b6252843b895ac0ae2dd14abf99a53985560343f
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