[med-svn] [Git][med-team/q2-alignment][master] 8 commits: Generate debian/control automatically to refresh version number
Andreas Tille (@tille)
gitlab at salsa.debian.org
Tue Jan 30 14:15:31 GMT 2024
Andreas Tille pushed to branch master at Debian Med / q2-alignment
Commits:
5c7dd49a by Andreas Tille at 2024-01-30T12:22:14+01:00
Generate debian/control automatically to refresh version number
- - - - -
c57c085d by Andreas Tille at 2024-01-30T12:22:31+01:00
New upstream version 2023.9.0
- - - - -
fa4bd99c by Andreas Tille at 2024-01-30T12:22:31+01:00
routine-update: New upstream version
- - - - -
05188f3b by Andreas Tille at 2024-01-30T12:22:32+01:00
Update upstream source from tag 'upstream/2023.9.0'
Update to upstream version '2023.9.0'
with Debian dir cf843b9e197fb19e219d1ac4157d103cccc12d95
- - - - -
a9220808 by Andreas Tille at 2024-01-30T12:22:36+01:00
routine-update: Build-Depends: s/dh-python/dh-sequence-python3/
- - - - -
c6c931e1 by Andreas Tille at 2024-01-30T12:37:48+01:00
Fix typo
- - - - -
38b4b47e by Andreas Tille at 2024-01-30T12:38:50+01:00
routine-update: Regenerate debian/control from debian/control.in
- - - - -
addbfe6f by Andreas Tille at 2024-01-30T12:41:56+01:00
routine-update: Ready to upload to unstable
- - - - -
5 changed files:
- debian/changelog
- debian/control
- + debian/control.in
- debian/rules
- q2_alignment/_version.py
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+q2-alignment (2023.9.0-1) unstable; urgency=medium
+
+ * Team upload.
+ * New upstream version
+ * Generate debian/control automatically to refresh version number
+ * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
+ * Regenerate debian/control from debian/control.in (routine-update)
+
+ -- Andreas Tille <tille at debian.org> Tue, 30 Jan 2024 12:38:50 +0100
+
q2-alignment (2023.7.0-1) unstable; urgency=medium
* Team upload.
=====================================
debian/control
=====================================
@@ -1,3 +1,4 @@
+# This file is autogenerated from control.in to update versioned dependencies
Source: q2-alignment
Section: science
Priority: optional
@@ -5,13 +6,13 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>,
Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper-compat (= 13),
- dh-python,
+ dh-sequence-python3,
python3,
python3-setuptools,
python3-skbio,
python3-pytest-cov,
- qiime (>= 2022.11.1),
- q2-types (>= 2022.11.1),
+ qiime (>= 2023.9),
+ q2-types (>= 2023.9),
mafft
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/q2-alignment
@@ -27,8 +28,8 @@ Depends: ${shlibs:Depends},
python3-setuptools,
python3-skbio,
mafft,
- qiime (>= 2022.11.1),
- q2-types (>= 2022.11.1)
+ qiime (>= 2023.9),
+ q2-types (>= 2023.9)
Suggests: sina
Description: QIIME 2 plugin for generating and manipulating alignments
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
=====================================
debian/control.in
=====================================
@@ -0,0 +1,54 @@
+Source: q2-alignment
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Liubov Chuprikova <chuprikovalv at gmail.com>,
+ Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper-compat (= 13),
+ dh-sequence-python3,
+ python3,
+ python3-setuptools,
+ python3-skbio,
+ python3-pytest-cov,
+ qiime (>= @DEB_VERSION_UPSTREAM@),
+ q2-types (>= @DEB_VERSION_UPSTREAM@),
+ mafft
+Standards-Version: 4.6.2
+Vcs-Browser: https://salsa.debian.org/med-team/q2-alignment
+Vcs-Git: https://salsa.debian.org/med-team/q2-alignment.git
+Homepage: https://qiime2.org/
+Rules-Requires-Root: no
+
+Package: q2-alignment
+Architecture: all
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${python3:Depends},
+ python3-setuptools,
+ python3-skbio,
+ mafft,
+ qiime (>= @DEB_VERSION_UPSTREAM@),
+ q2-types (>= @DEB_VERSION_UPSTREAM@)
+Suggests: sina
+Description: QIIME 2 plugin for generating and manipulating alignments
+ QIIME 2 is a powerful, extensible, and decentralized microbiome analysis
+ package with a focus on data and analysis transparency. QIIME 2 enables
+ researchers to start an analysis with raw DNA sequence data and finish with
+ publication-quality figures and statistical results.
+ Key features:
+ * Integrated and automatic tracking of data provenance
+ * Semantic type system
+ * Plugin system for extending microbiome analysis functionality
+ * Support for multiple types of user interfaces (e.g. API, command line,
+ graphical)
+ .
+ QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis
+ pipeline. QIIME 2 will address many of the limitations of QIIME 1, while
+ retaining the features that makes QIIME 1 a powerful and widely-used analysis
+ pipeline.
+ .
+ QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline.
+ New functionality will regularly become available through QIIME 2 plugins. You
+ can view a list of plugins that are currently available on the QIIME 2 plugin
+ availability page. The future plugins page lists plugins that are being
+ developed.
=====================================
debian/rules
=====================================
@@ -3,6 +3,8 @@
# DH_VERBOSE := 1
export LC_ALL=C.UTF-8
+include /usr/share/dpkg/default.mk
+VERSION_UPSTREAM=$(shell echo $(DEB_VERSION_UPSTREAM) | sed -e 's/\(20[0-9][0-9]\.[0-9]\+\)\..*/\1/')
# For testing, we need .egg-info so the entry points are available.
export PYBUILD_BEFORE_TEST=python{version} setup.py develop --install-dir {build_dir}
@@ -12,7 +14,11 @@ export PYBUILD_BEFORE_INSTALL=rm -rvf {build_dir}/q2-alignment.egg-* {build_dir}
%:
- dh $@ --with python3 --buildsystem=pybuild
+ dh $@ --buildsystem=pybuild
+
+debian/control: debian/control.in
+ echo "# This file is autogenerated from control.in to update versioned dependencies" > $@
+ sed -e"s/@DEB_VERSION_UPSTREAM@/$(VERSION_UPSTREAM)/g" $< >> $@
#FIXME: Delaying true testing to autopkgtests since QIIME2 module cannot be registered
# at build time.
=====================================
q2_alignment/_version.py
=====================================
@@ -23,9 +23,9 @@ def get_keywords():
# setup.py/versioneer.py will grep for the variable names, so they must
# each be defined on a line of their own. _version.py will just call
# get_keywords().
- git_refnames = " (tag: 2023.7.0, Release-2023.7)"
- git_full = "321c0997a84408a93acdbcaa3d2ab712e933c4c3"
- git_date = "2023-08-17 18:33:20 +0000"
+ git_refnames = " (tag: 2023.9.0, Release-2023.9)"
+ git_full = "53e02d286914e927f233ed38757058607b1fce00"
+ git_date = "2023-10-03 21:50:02 +0000"
keywords = {"refnames": git_refnames, "full": git_full, "date": git_date}
return keywords
View it on GitLab: https://salsa.debian.org/med-team/q2-alignment/-/compare/187d93fa92357d0cd4b6c1aa75e88ad48d15cf1f...addbfe6ff9e3d9ece6e6184467c1320ea88d72ea
--
View it on GitLab: https://salsa.debian.org/med-team/q2-alignment/-/compare/187d93fa92357d0cd4b6c1aa75e88ad48d15cf1f...addbfe6ff9e3d9ece6e6184467c1320ea88d72ea
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