[med-svn] [Git][med-team/pycorrfit][upstream] New upstream version 1.1.7+nopack
Michael R. Crusoe (@crusoe)
gitlab at salsa.debian.org
Sat Jul 6 10:30:23 BST 2024
Michael R. Crusoe pushed to branch upstream at Debian Med / pycorrfit
Commits:
2593bc27 by Michael R. Crusoe at 2024-07-06T10:56:02+02:00
New upstream version 1.1.7+nopack
- - - - -
15 changed files:
- − .github/FUNDING.yml
- − ChangeLog.txt
- + PKG-INFO
- + doc/PyCorrFit_doc.pdf
- − examples/sample_sessions/CSFCS_DiO-in-DOPC.pcfs
- − examples/sample_sessions/ConfocalFCS_Alexa488_xcorr.pcfs
- + pycorrfit.egg-info/PKG-INFO
- + pycorrfit.egg-info/SOURCES.txt
- + pycorrfit.egg-info/dependency_links.txt
- + pycorrfit.egg-info/entry_points.txt
- + pycorrfit.egg-info/requires.txt
- + pycorrfit.egg-info/top_level.txt
- + pycorrfit/_version_save.py
- − pycorrfit/readfiles/read_pt3_scripts/LICENSE
- setup.cfg
Changes:
=====================================
.github/FUNDING.yml deleted
=====================================
@@ -1,2 +0,0 @@
-github: paulmueller
-liberapay: paulmueller
=====================================
ChangeLog.txt deleted
=====================================
@@ -1,4 +0,0 @@
-1.1.0
-- The changelog has moved. This file will be removed eventually,
- but is kept to allow older versions of PyCorrFit to be notified
- that a new version has been released.
=====================================
PKG-INFO
=====================================
@@ -0,0 +1,46 @@
+Metadata-Version: 2.1
+Name: pycorrfit
+Version: 1.1.7
+Summary: Scientific tool for fitting correlation curves on a logarithmic plot.
+Home-page: https://github.com/FCS-analysis/PyCorrFit
+Author: Paul Müller
+Author-email: dev at craban.de
+License: GPL v2
+Description: |PyCorrFit|
+ ===========
+
+ |PyPI Version| |Build Status Win| |Build Status Travis| |Coverage Status| |Docs Status|
+
+
+ Documentation
+ -------------
+ The documentation of PyCorrFit is available at https://pycorrfit.readthedocs.org.
+
+
+ Problems
+ --------
+ If you find a bug or need help with a specific topic, do not hesitate to ask a question
+ at the `issues page <https://github.com/FCS-analysis/PyCorrFit/wiki/Creating-a-new-issue>`__.
+
+
+
+ .. |PyCorrFit| image:: https://raw.github.com/FCS-analysis/PyCorrFit/master/doc/Images/PyCorrFit_logo_dark.png
+ .. |PyPI Version| image:: https://img.shields.io/pypi/v/PyCorrFit.svg
+ :target: https://pypi.python.org/pypi/pycorrfit
+ .. |Build Status Win| image:: https://img.shields.io/appveyor/ci/paulmueller/PyCorrFit/master.svg?label=win
+ :target: https://ci.appveyor.com/project/paulmueller/pycorrfit
+ .. |Build Status Travis| image:: https://img.shields.io/travis/FCS-analysis/PyCorrFit/master.svg?label=linux_osx
+ :target: https://travis-ci.org/FCS-analysis/PyCorrFit
+ .. |Coverage Status| image:: https://img.shields.io/codecov/c/github/FCS-analysis/PyCorrFit/master.svg
+ :target: https://codecov.io/gh/FCS-analysis/PyCorrFit
+ .. |Docs Status| image:: https://readthedocs.org/projects/pycorrfit/badge/?version=latest
+ :target: https://readthedocs.org/projects/pycorrfit/builds/
+
+Keywords: fluorescence correlation spectroscopy
+Platform: ALL
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Classifier: Intended Audience :: Science/Research
+Requires-Python: >=3.6, <4
+Provides-Extra: GUI
=====================================
doc/PyCorrFit_doc.pdf
=====================================
Binary files /dev/null and b/doc/PyCorrFit_doc.pdf differ
=====================================
examples/sample_sessions/CSFCS_DiO-in-DOPC.pcfs deleted
=====================================
Binary files a/examples/sample_sessions/CSFCS_DiO-in-DOPC.pcfs and /dev/null differ
=====================================
examples/sample_sessions/ConfocalFCS_Alexa488_xcorr.pcfs deleted
=====================================
Binary files a/examples/sample_sessions/ConfocalFCS_Alexa488_xcorr.pcfs and /dev/null differ
=====================================
pycorrfit.egg-info/PKG-INFO
=====================================
@@ -0,0 +1,46 @@
+Metadata-Version: 2.1
+Name: pycorrfit
+Version: 1.1.7
+Summary: Scientific tool for fitting correlation curves on a logarithmic plot.
+Home-page: https://github.com/FCS-analysis/PyCorrFit
+Author: Paul Müller
+Author-email: dev at craban.de
+License: GPL v2
+Description: |PyCorrFit|
+ ===========
+
+ |PyPI Version| |Build Status Win| |Build Status Travis| |Coverage Status| |Docs Status|
+
+
+ Documentation
+ -------------
+ The documentation of PyCorrFit is available at https://pycorrfit.readthedocs.org.
+
+
+ Problems
+ --------
+ If you find a bug or need help with a specific topic, do not hesitate to ask a question
+ at the `issues page <https://github.com/FCS-analysis/PyCorrFit/wiki/Creating-a-new-issue>`__.
+
+
+
+ .. |PyCorrFit| image:: https://raw.github.com/FCS-analysis/PyCorrFit/master/doc/Images/PyCorrFit_logo_dark.png
+ .. |PyPI Version| image:: https://img.shields.io/pypi/v/PyCorrFit.svg
+ :target: https://pypi.python.org/pypi/pycorrfit
+ .. |Build Status Win| image:: https://img.shields.io/appveyor/ci/paulmueller/PyCorrFit/master.svg?label=win
+ :target: https://ci.appveyor.com/project/paulmueller/pycorrfit
+ .. |Build Status Travis| image:: https://img.shields.io/travis/FCS-analysis/PyCorrFit/master.svg?label=linux_osx
+ :target: https://travis-ci.org/FCS-analysis/PyCorrFit
+ .. |Coverage Status| image:: https://img.shields.io/codecov/c/github/FCS-analysis/PyCorrFit/master.svg
+ :target: https://codecov.io/gh/FCS-analysis/PyCorrFit
+ .. |Docs Status| image:: https://readthedocs.org/projects/pycorrfit/badge/?version=latest
+ :target: https://readthedocs.org/projects/pycorrfit/builds/
+
+Keywords: fluorescence correlation spectroscopy
+Platform: ALL
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Classifier: Intended Audience :: Science/Research
+Requires-Python: >=3.6, <4
+Provides-Extra: GUI
=====================================
pycorrfit.egg-info/SOURCES.txt
=====================================
@@ -0,0 +1,153 @@
+CHANGELOG
+LICENSE
+MANIFEST.in
+README.rst
+setup.cfg
+setup.py
+doc/Bibliography.bib
+doc/PyCorrFit_doc.pdf
+doc/PyCorrFit_doc.tex
+doc/PyCorrFit_doc_content.tex
+doc/PyCorrFit_doc_models.tex
+doc/README.md
+doc/Images/PyCorrFit_Screenshot_CSFCS.png
+doc/Images/PyCorrFit_Screenshot_Main.png
+doc/Images/PyCorrFit_icon.png
+doc/Images/PyCorrFit_icon.svg
+doc/Images/PyCorrFit_icon_dark.svg
+doc/Images/PyCorrFit_logo.svg
+doc/Images/PyCorrFit_logo_dark.pdf
+doc/Images/PyCorrFit_logo_dark.png
+doc/Images/PyCorrFit_logo_dark.svg
+docs/README.md
+docs/conf.py
+docs/index.rst
+docs/requirements.txt
+docs/sec_about.rst
+docs/sec_changelog.rst
+docs/sec_contribute.rst
+docs/sec_gallery.rst
+docs/sec_getting_started.rst
+docs/_static/PyCorrFit_logo_dark.png
+docs/extensions/github_changelog.py
+docs/extensions/simple_gallery.py
+docs/gallery/Screenshot_Desktop.png
+docs/gallery/Screenshot_Desktop_Mac.png
+docs/gallery/Screenshot_Desktop_Raspbian_Jessie.png
+docs/gallery/Screenshot_Desktop_Win.png
+docs/gallery/Screenshot_Graphics_output.png
+docs/gallery/Screenshot_Main.png
+docs/gallery/Screenshot_Select_curves.png
+docs/gallery/Screenshot_Trace_view.png
+examples/external_model_functions/ExampleFunc_CS_2D+2D+S+T.txt
+examples/external_model_functions/ExampleFunc_CS_3D+S+T.txt
+examples/external_model_functions/ExampleFunc_Exp_correlated_noise.txt
+examples/external_model_functions/ExampleFunc_SFCS_1C_2D_Autocorrelation.txt
+examples/external_model_functions/ExampleFunc_SFCS_1C_2D_Cross-correlation.txt
+examples/external_model_functions/ExampleFunc_TIRF_zOnly.txt
+examples/external_model_functions/Model_AC_3D+T_confocal.txt
+examples/external_model_functions/Model_Flow_AC_3D_confocal.txt
+examples/external_model_functions/Model_Flow_CC_Backward_3D_confocal.txt
+examples/external_model_functions/Model_Flow_CC_Forward_3D_confocal.txt
+pycorrfit/PyCorrFit.py
+pycorrfit/__init__.py
+pycorrfit/__main__.py
+pycorrfit/_version.py
+pycorrfit/_version_save.py
+pycorrfit/correlation.py
+pycorrfit/fit.py
+pycorrfit/meta.py
+pycorrfit/openfile.py
+pycorrfit/trace.py
+pycorrfit.egg-info/PKG-INFO
+pycorrfit.egg-info/SOURCES.txt
+pycorrfit.egg-info/dependency_links.txt
+pycorrfit.egg-info/entry_points.txt
+pycorrfit.egg-info/requires.txt
+pycorrfit.egg-info/top_level.txt
+pycorrfit/gui/__init__.py
+pycorrfit/gui/contribute.py
+pycorrfit/gui/doc.py
+pycorrfit/gui/edclasses.py
+pycorrfit/gui/frontend.py
+pycorrfit/gui/icon.py
+pycorrfit/gui/main.py
+pycorrfit/gui/misc.py
+pycorrfit/gui/page.py
+pycorrfit/gui/plotting.py
+pycorrfit/gui/threaded_progress.py
+pycorrfit/gui/update.py
+pycorrfit/gui/usermodel.py
+pycorrfit/gui/wxutils.py
+pycorrfit/gui/tools/__init__.py
+pycorrfit/gui/tools/average.py
+pycorrfit/gui/tools/background.py
+pycorrfit/gui/tools/batchcontrol.py
+pycorrfit/gui/tools/chooseimport.py
+pycorrfit/gui/tools/comment.py
+pycorrfit/gui/tools/datarange.py
+pycorrfit/gui/tools/example.py
+pycorrfit/gui/tools/globalfit.py
+pycorrfit/gui/tools/info.py
+pycorrfit/gui/tools/overlaycurves.py
+pycorrfit/gui/tools/parmrange.py
+pycorrfit/gui/tools/plotexport.py
+pycorrfit/gui/tools/simulation.py
+pycorrfit/gui/tools/statistics.py
+pycorrfit/gui/tools/trace.py
+pycorrfit/models/MODEL_TIRF_1C.py
+pycorrfit/models/MODEL_TIRF_2D2D.py
+pycorrfit/models/MODEL_TIRF_3D2D.py
+pycorrfit/models/MODEL_TIRF_3D2Dkin_Ries.py
+pycorrfit/models/MODEL_TIRF_3D3D.py
+pycorrfit/models/MODEL_TIRF_gaussian_1C.py
+pycorrfit/models/MODEL_TIRF_gaussian_3D2D.py
+pycorrfit/models/MODEL_TIRF_gaussian_3D3D.py
+pycorrfit/models/__init__.py
+pycorrfit/models/classes.py
+pycorrfit/models/control.py
+pycorrfit/models/cp_confocal.py
+pycorrfit/models/cp_mix.py
+pycorrfit/models/cp_triplet.py
+pycorrfit/models/model_confocal_2d.py
+pycorrfit/models/model_confocal_2d_2d.py
+pycorrfit/models/model_confocal_3d.py
+pycorrfit/models/model_confocal_3d_2d.py
+pycorrfit/models/model_confocal_3d_3d.py
+pycorrfit/models/model_confocal_t_2d.py
+pycorrfit/models/model_confocal_t_2d_2d.py
+pycorrfit/models/model_confocal_t_3d.py
+pycorrfit/models/model_confocal_t_3d_2d.py
+pycorrfit/models/model_confocal_t_3d_3d.py
+pycorrfit/models/model_confocal_t_3d_3d_2d.py
+pycorrfit/models/model_confocal_t_3d_3d_3d.py
+pycorrfit/models/model_confocal_tt_2d.py
+pycorrfit/models/model_confocal_tt_2d_2d.py
+pycorrfit/models/model_confocal_tt_3d.py
+pycorrfit/models/model_confocal_tt_3d_2d.py
+pycorrfit/models/model_confocal_tt_3d_3d.py
+pycorrfit/readfiles/__init__.py
+pycorrfit/readfiles/read_ASC_ALV.py
+pycorrfit/readfiles/read_CSV_PyCorrFit.py
+pycorrfit/readfiles/read_FCS_Confocor3.py
+pycorrfit/readfiles/read_SIN_correlator_com.py
+pycorrfit/readfiles/read_mat_ries.py
+pycorrfit/readfiles/read_pt3_PicoQuant.py
+pycorrfit/readfiles/util.py
+pycorrfit/readfiles/read_pt3_scripts/README
+pycorrfit/readfiles/read_pt3_scripts/__init__.py
+pycorrfit/readfiles/read_pt3_scripts/__version__.py
+pycorrfit/readfiles/read_pt3_scripts/correlation_methods.py
+pycorrfit/readfiles/read_pt3_scripts/correlation_objects.py
+pycorrfit/readfiles/read_pt3_scripts/fib4.pyx
+pycorrfit/readfiles/read_pt3_scripts/fitting_methods.py
+pycorrfit/readfiles/read_pt3_scripts/import_methods.py
+tests/README.md
+tests/data_file_dl.py
+tests/test_constraints.py
+tests/test_file_formats.py
+tests/test_fit_model_gaussian.py
+tests/test_fit_models.py
+tests/test_global_fit.py
+tests/test_session.py
+tests/test_simple.py
\ No newline at end of file
=====================================
pycorrfit.egg-info/dependency_links.txt
=====================================
@@ -0,0 +1 @@
+
=====================================
pycorrfit.egg-info/entry_points.txt
=====================================
@@ -0,0 +1,3 @@
+[gui_scripts]
+pycorrfit = pycorrfit.gui.main:Main
+
=====================================
pycorrfit.egg-info/requires.txt
=====================================
@@ -0,0 +1,10 @@
+lmfit>=0.9.2
+numpy>=1.14.2
+pyyaml>=3.12
+scipy>=1.0.1
+
+[GUI]
+matplotlib>=2.2.2
+sympy>=1.1.1
+simplejson
+wxPython>=4.0.1
=====================================
pycorrfit.egg-info/top_level.txt
=====================================
@@ -0,0 +1 @@
+pycorrfit
=====================================
pycorrfit/_version_save.py
=====================================
@@ -0,0 +1,3 @@
+#!/usr/bin/env python
+# This file was created automatically
+longversion = '1.1.7'
=====================================
pycorrfit/readfiles/read_pt3_scripts/LICENSE deleted
=====================================
@@ -1,340 +0,0 @@
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-
=====================================
setup.cfg
=====================================
@@ -1,6 +1,10 @@
[aliases]
-test=pytest
+test = pytest
[metadata]
license_file = LICENSE
+[egg_info]
+tag_build =
+tag_date = 0
+
View it on GitLab: https://salsa.debian.org/med-team/pycorrfit/-/commit/2593bc271614b5b182587faac6e4f1f4b8613092
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