[med-svn] [Git][med-team/hisat2][master] d/patches/no_imp: add Python3.12 support.

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / hisat2


Commits:
190ff5a5 by Michael R. Crusoe at 2024-07-09T12:26:55+02:00
d/patches/no_imp: add Python3.12 support.

Closes: #1074739

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/no_imp
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+hisat2 (2.2.1-5) unstable; urgency=medium
+
+  * d/patches/no_imp: add Python3.12 support. Closes: #1074739
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Tue, 09 Jul 2024 12:26:53 +0200
+
 hisat2 (2.2.1-4) unstable; urgency=medium
 
   * Team upload


=====================================
debian/patches/no_imp
=====================================
@@ -0,0 +1,39 @@
+From: Michael R. Crusoe <crusoe at debian.org>
+Subject: Add Python3.12 support by removing use of the "imp" module
+Forwarded: https://github.com/DaehwanKimLab/hisat2/pull/435
+
+Workaround is from https://docs.python.org/3.12/whatsnew/3.12.html#imp
+
+--- hisat2.orig/hisat2-inspect
++++ hisat2/hisat2-inspect
+@@ -21,10 +21,20 @@
+ 
+ 
+ import os
+-import imp
++import importlib.util
++import importlib.machinery
+ import inspect
+ import logging
+ 
++def load_source(modname, filename):
++    loader = importlib.machinery.SourceFileLoader(modname, filename)
++    spec = importlib.util.spec_from_file_location(modname, filename, loader=loader)
++    module = importlib.util.module_from_spec(spec)
++    # The module is always executed and not cached in sys.modules.
++    # Uncomment the following line to cache the module.
++    # sys.modules[module.__name__] = module
++    loader.exec_module(module)
++    return module
+ 
+ def main():
+     logging.basicConfig(level=logging.ERROR,
+@@ -38,7 +48,7 @@
+     curr_script           = os.path.realpath(inspect.getsourcefile(main))
+     ex_path               = os.path.dirname(curr_script)
+     inspect_bin_spec      = os.path.join(ex_path,inspect_bin_s)
+-    bld                   = imp.load_source('hisat2-build',os.path.join(ex_path,'hisat2-build'))
++    bld                   = load_source('hisat2-build',os.path.join(ex_path,'hisat2-build'))
+     options,arguments     = bld.build_args()
+ 
+     if '--verbose' in options:


=====================================
debian/patches/series
=====================================
@@ -1,3 +1,4 @@
+no_imp
 hardening
 reproducibile
 fix-freebsd



View it on GitLab: https://salsa.debian.org/med-team/hisat2/-/commit/190ff5a5b4b017bbd57f210bb57e7ff89d79e595

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