[med-svn] [Git][med-team/gffread][master] d/tests: adjust architecture lists, enable more testing with riscv64

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / gffread


Commits:
9445afc7 by Michael R. Crusoe at 2024-07-09T13:19:31+02:00
d/tests: adjust architecture lists, enable more testing with riscv64

- - - - -


3 changed files:

- debian/changelog
- debian/tests/control
- debian/tests/run-tests


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+gffread (0.12.7-6) unstable; urgency=medium
+
+  * d/tests: adjust architecture lists, enable more testing with riscv64
+
+ -- Michael R. Crusoe <crusoe at debian.org>  Tue, 09 Jul 2024 13:19:28 +0200
+
 gffread (0.12.7-5) unstable; urgency=medium
 
   * Revert "d/t/*: work around uninstallable packages."


=====================================
debian/tests/control
=====================================
@@ -1,3 +1,3 @@
 Tests: run-tests
-Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit [amd64 arm64 ppc64el], emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el], proteinortho [amd64 arm64 ppc64el s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el], r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades [amd64], trinityrnaseq-examples, dpkg-dev
+Depends: gffread, bash, augustus-doc, bedtools-test, cnvkit, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, optimir [amd64 arm64 ppc64el riscv64], proteinortho [amd64 arm64 ppc64el riscv64 s390x], python3-gffutils, python3-pybedtools [amd64 arm64 ppc64el riscv64], r-bioc-genomicfeatures [amd64 arm64 ppc64el riscv64 s390x], r-bioc-gviz [amd64 arm64 ppc64el riscv64 s390x], r-bioc-rhtslib [amd64 arm64 ppc64el riscv64 s390x], r-bioc-rtracklayer [amd64 arm64 ppc64el riscv64 s390x], seqan-apps [amd64 arm64 ppc64el riscv64 s390x], spades [amd64], trinityrnaseq-examples [amd64 arm64 ppc64el riscv64], dpkg-dev
 Restrictions: allow-stderr


=====================================
debian/tests/run-tests
=====================================
@@ -10,22 +10,26 @@ cd "$AUTOPKGTEST_TMP"
 # generated via
 # apt-file search --package-only --regexp '\.gff.?$' | grep -v -E "bedops|cct|ugene|gbrowse-data"
 
-PACKAGES="augustus-doc, bedtools-test, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples"
+PACKAGES="augustus-doc, bedtools-test, cnvkit, emboss-data, emboss-test, gbrowse, genometools-common, gff2aplot, gff2ps, htslib-test, libbio-graphics-perl, python3-gffutils"
 
 if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "amd64" ] ; then
-	PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools, spades"
+	PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, spades, trinityrnaseq-examples"
 fi
 
 if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "arm64" ] ; then
-	PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools"
+	PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples"
 fi
 
 if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "ppc64el" ] ; then
-	PACKAGES+=", cnvkit, optimir, proteinortho, python3-pybedtools"
+	PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples"
+fi
+
+if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "riscv64" ] ; then
+	PACKAGES+=", optimir, proteinortho, python3-pybedtools, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps, trinityrnaseq-examples"
 fi
 
 if [ "$(dpkg-architecture -qDEB_BUILD_ARCH)" = "s390x" ] ; then
-	PACKAGES+=", proteinortho"
+	PACKAGES+=", proteinortho, r-bioc-genomicfeatures, r-bioc-gviz, r-bioc-rhtslib, r-bioc-rtracklayer, seqan-apps"
 fi
 
 IFS=", " read -r -a pkgs <<< ${PACKAGES}



View it on GitLab: https://salsa.debian.org/med-team/gffread/-/commit/9445afc7be984feca1334e366bc77675469ed887

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