[med-svn] [Git][med-team/libbpp-raa][master] 4 commits: Since every GCC version bump ends up in a bug caused by the need to update...

Andreas Tille (@tille) gitlab at salsa.debian.org
Tue Jul 16 14:15:59 BST 2024 


Andreas Tille pushed to branch master at Debian Med / libbpp-raa


Commits:
dcfe92ec by Andreas Tille at 2024-07-16T15:02:49+02:00
Since every GCC version bump ends up in a bug caused by the need to update symbols files we stop providing symbols for this library

- - - - -
99e1beed by Andreas Tille at 2024-07-16T15:04:03+02:00
lintian-override for no-symbols-control-file

- - - - -
bd0aeea9 by Andreas Tille at 2024-07-16T15:04:57+02:00
Standards-Version: 4.7.0

- - - - -
3ed50bde by Andreas Tille at 2024-07-16T15:05:32+02:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- debian/control
- debian/libbpp-raa4t64.lintian-overrides
- − debian/libbpp-raa4t64.symbols.amd64


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+libbpp-raa (2.4.1-9) unstable; urgency=medium
+
+  * Since every GCC version bump ends up in a bug caused by the need to
+    update symbols files we stop providing symbols for this library
+    Closes: #1075152
+  * lintian-override for no-symbols-control-file
+  * Standards-Version: 4.7.0
+
+ -- Andreas Tille <tille at debian.org>  Tue, 16 Jul 2024 15:05:05 +0200
+
 libbpp-raa (2.4.1-8) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -9,7 +9,7 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
                d-shlibs (>= 0.106~),
                zlib1g-dev,
                libbpp-seq-dev
-Standards-Version: 4.6.2
+Standards-Version: 4.7.0
 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-raa
 Vcs-Git: https://salsa.debian.org/med-team/libbpp-raa.git
 Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page


=====================================
debian/libbpp-raa4t64.lintian-overrides
=====================================
@@ -1,2 +1,3 @@
 libbpp-raa4t64: package-name-doesnt-match-sonames libbpp-raa4
-libbpp-raa4t64: conflicts-with-version libbpp-raa4 (<< 2.4.1-8)
+libbpp-raa4t64: conflicts-with-version
+libbpp-raa4t64: no-symbols-control-file


=====================================
debian/libbpp-raa4t64.symbols.amd64 deleted
=====================================
@@ -1,185 +0,0 @@
-libbpp-raa.so.4 libbpp-raa4t64 #MINVER#
-* Build-Depends-Package: libbpp-raa-dev
- _ZN3bpp14RaaSpeciesTree10firstChildEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree11nextSynonymEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5countEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6getTidEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6parentEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7isChildEii at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8getMajorEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree9nextChildEii at Base 2.4.1
- _ZN3bpp16BadCharExceptionD0Ev at Base 2.4.1
- _ZN3bpp16BadCharExceptionD1Ev at Base 2.4.1
- _ZN3bpp16BadCharExceptionD2Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD0Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD1Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD2Ev at Base 2.4.1
- _ZN3bpp3RAA10deleteListEPNS_7RaaListE at Base 2.4.1
- _ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_ at Base 2.4.1
- _ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 2.4.1
- _ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_ at Base 2.4.1
- _ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA12translateCDSEi at Base 2.4.1
- _ZN3bpp3RAA13closeDatabaseEv at Base 2.4.1
- _ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA13getAttributesEi at Base 2.4.1
- _ZN3bpp3RAA14getNextFeatureEPv at Base 2.4.1
- _ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_ at Base 2.4.1
- _ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE at Base 2.4.1
- _ZN3bpp3RAA15loadSpeciesTreeEb at Base 2.4.1
- _ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_ at Base 2.4.1
- _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei at Base 2.4.1
- _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA18translateInitCodonEi at Base 2.4.1
- _ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE at Base 2.4.1
- _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA22getCurrentAnnotAddressEv at Base 2.4.1
- _ZN3bpp3RAA22interruptGetAnyFeatureEPv at Base 2.4.1
- _ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 2.4.1
- _ZN3bpp3RAA6getSeqEii at Base 2.4.1
- _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
- _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
- _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAAD1Ev at Base 2.4.1
- _ZN3bpp3RAAD2Ev at Base 2.4.1
- _ZN3bpp7RaaList10addElementEi at Base 2.4.1
- _ZN3bpp7RaaList11nextElementEv at Base 2.4.1
- _ZN3bpp7RaaList11parentsOnlyEv at Base 2.4.1
- _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList12firstElementEv at Base 2.4.1
- _ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp7RaaList12residueCountB5cxx11Ev at Base 2.4.1
- _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList13removeElementEi at Base 2.4.1
- _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp7RaaList7setFromEi at Base 2.4.1
- _ZN3bpp7RaaList8getCountEv at Base 2.4.1
- _ZN3bpp7RaaList8isInListEi at Base 2.4.1
- _ZN3bpp7RaaList8zeroListEv at Base 2.4.1
- _ZN3bpp7RaaListC1Ev at Base 2.4.1
- _ZN3bpp7RaaListC2Ev at Base 2.4.1
- _ZNK3bpp17AlphabetException11getAlphabetEv at Base 2.4.1
- _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_ at Base 2.4.1
- _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- ajout_reponse at Base 2.4.1
- aminoacids at Base 2.4.1
- atoi_u at Base 2.4.1
- calc_codon_number at Base 2.4.1
- chg_acnuc at Base 2.4.1
- clear_reponse at Base 2.4.1
- close_sock_gz_r at Base 2.4.1
- codaa at Base 2.4.1
- compact at Base 2.4.1
- compch at Base 2.4.1
- complementer_base at Base 2.4.1
- complementer_seq at Base 2.4.1
- genetic_code at Base 2.4.1
- get_acnuc_gc_number at Base 2.4.1
- get_code_descr at Base 2.4.1
- get_ncbi_gc_number at Base 2.4.1
- gets_no_echo at Base 2.4.1
- init_codon_to_aa at Base 2.4.1
- initreponse at Base 2.4.1
- majuscules at Base 2.4.1
- mycalloc at Base 2.4.1
- notrail2 at Base 2.4.1
- padtosize at Base 2.4.1
- parse at Base 2.4.1
- prepare_sock_gz_r at Base 2.4.1
- prepch at Base 2.4.1
- print_raa_long at Base 2.4.1
- raa_1_coordinate_set at Base 2.4.1
- raa_MD5String at Base 2.4.1
- raa_acnucclose at Base 2.4.1
- raa_acnucopen at Base 2.4.1
- raa_acnucopen_alt at Base 2.4.1
- raa_alllistranks at Base 2.4.1
- raa_bcount at Base 2.4.1
- raa_bit0 at Base 2.4.1
- raa_bit1 at Base 2.4.1
- raa_btest at Base 2.4.1
- raa_copylist at Base 2.4.1
- raa_countfilles at Base 2.4.1
- raa_decode_address at Base 2.4.1
- raa_error_mess_proc at Base 2.4.1
- raa_fcode at Base 2.4.1
- raa_followshrt2 at Base 2.4.1
- raa_get_taxon_info at Base 2.4.1
- raa_getattributes at Base 2.4.1
- raa_getemptylist at Base 2.4.1
- raa_getlistrank at Base 2.4.1
- raa_getliststate at Base 2.4.1
- raa_gfrag at Base 2.4.1
- raa_ghelp at Base 2.4.1
- raa_iknum at Base 2.4.1
- raa_isenum at Base 2.4.1
- raa_knowndbs at Base 2.4.1
- raa_loadtaxonomy at Base 2.4.1
- raa_modifylist at Base 2.4.1
- raa_next_annots at Base 2.4.1
- raa_nexteltinlist at Base 2.4.1
- raa_nexteltinlist_annots at Base 2.4.1
- raa_nextmatchkey at Base 2.4.1
- raa_open_socket at Base 2.4.1
- raa_opendb at Base 2.4.1
- raa_opendb_pw at Base 2.4.1
- raa_prep_acnuc_query at Base 2.4.1
- raa_prep_coordinates at Base 2.4.1
- raa_proc_query at Base 2.4.1
- raa_read_annots at Base 2.4.1
- raa_read_first_rec at Base 2.4.1
- raa_readacc at Base 2.4.1
- raa_readext at Base 2.4.1
- raa_readkey at Base 2.4.1
- raa_readlng at Base 2.4.1
- raa_readloc at Base 2.4.1
- raa_readshrt at Base 2.4.1
- raa_readsmj at Base 2.4.1
- raa_readspec at Base 2.4.1
- raa_readsub at Base 2.4.1
- raa_readsub_pannots at Base 2.4.1
- raa_releaselist at Base 2.4.1
- raa_residuecount at Base 2.4.1
- raa_savelist at Base 2.4.1
- raa_seq_to_annots at Base 2.4.1
- raa_seqrank_attributes at Base 2.4.1
- raa_setlistname at Base 2.4.1
- raa_setliststate at Base 2.4.1
- raa_short_descr at Base 2.4.1
- raa_translate_cds at Base 2.4.1
- raa_translate_init_codon at Base 2.4.1
- raa_zerolist at Base 2.4.1
- read_sock at Base 2.4.1
- read_sock_timeout at Base 2.4.1
- scan_raa_long at Base 2.4.1
- sock_flush at Base 2.4.1
- sock_fputs at Base 2.4.1
- sock_printf at Base 2.4.1
- strcmptrail at Base 2.4.1
- totcodes at Base 2.4.1
- trim_key at Base 2.4.1
- unprotect_quotes at Base 2.4.1
- val at Base 2.4.1
- z_getc at Base 2.4.1
- z_gets at Base 2.4.1
- z_read_sock at Base 2.4.1



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