[med-svn] [Git][med-team/freebayes][master] 8 commits: d/watch: mangle pre-release tags appropriately

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / freebayes


Commits:
a31a2da2 by Michael R. Crusoe at 2024-06-07T11:16:17+02:00
d/watch: mangle pre-release tags appropriately

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700b9338 by Michael R. Crusoe at 2024-06-07T11:16:39+02:00
routine-update: New upstream version

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96243c4d by Michael R. Crusoe at 2024-06-07T11:16:40+02:00
New upstream version 1.3.8
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0a2cd697 by Michael R. Crusoe at 2024-06-07T11:16:47+02:00
Update upstream source from tag 'upstream/1.3.8'

Update to upstream version '1.3.8'
with Debian dir aafe783a2577adb234540277042e5aba54f50faf
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34875b43 by Michael R. Crusoe at 2024-06-07T11:25:23+02:00
d/control: pkg-config → pkgconf

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8f6828d4 by Michael R. Crusoe at 2024-06-07T12:54:00+02:00
d/ext/multichoose: bundle in library missing from tarball.

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12058d59 by Michael R. Crusoe at 2024-06-07T12:55:25+02:00
include fastahack include path to fix error in /usr/include/vcflib/Variant.h

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9de9fb53 by Michael R. Crusoe at 2024-06-07T12:55:26+02:00
d/patches: cherry-pick from upstream to use libfastahack-dev and libsmithwaterman-dev instead of the missing code copies.

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30 changed files:

- + .github/ISSUE_TEMPLATE/bug_report.md
- + .github/workflows/ci_test.yml
- + .github/workflows/issue-tracker-bot.yaml
- + .github/workflows/main.yml
- + .github/workflows/support-tracker-bot.yaml
- .gitmodules
- + .travis.yml
- README.md
- RELEASE-NOTES.md
- debian/changelog
- debian/control
- debian/copyright
- + debian/ext/multichoose/.gitignore
- + debian/ext/multichoose/LICENSE
- + debian/ext/multichoose/README.md
- + debian/ext/multichoose/cli.js
- + debian/ext/multichoose/index.js
- + debian/ext/multichoose/multichoose.c
- + debian/ext/multichoose/multichoose.cpp
- + debian/ext/multichoose/multichoose.h
- + debian/ext/multichoose/multichoose.py
- + debian/ext/multichoose/multipermute.cpp
- + debian/ext/multichoose/multipermute.h
- + debian/ext/multichoose/multipermute.py
- + debian/ext/multichoose/package.json
- + debian/ext/multichoose/test.js
- + debian/patches/0001-Testing-cleaner-build-for-Debian.patch
- + debian/patches/0002-Use-Linux-conventions-for-include.patch
- + debian/patches/0003-fastahack-and-smithwaterman-dep-treatment.patch
- + debian/patches/0004-Simplified-build-for-debian.patch


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/compare/738aec58683e0ab67cfbfefa0745720ee9e31f92...9de9fb53e85c9d4aee04d6554973ca2ac11f71ab

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View it on GitLab: https://salsa.debian.org/med-team/freebayes/-/compare/738aec58683e0ab67cfbfefa0745720ee9e31f92...9de9fb53e85c9d4aee04d6554973ca2ac11f71ab
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