[med-svn] [Git][med-team/obitools][master] 2 commits: Use pickle to fix error with extractreads. Thanks a lot to Sudip Mukherjee...

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / obitools


Commits:
c44f0e51 by Andreas Tille at 2024-06-20T09:39:27+02:00
Use pickle to fix error with extractreads.  Thanks a lot to Sudip Mukherjee <sudipm.mukherjee at gmail.com>

- - - - -
0c4e1061 by Andreas Tille at 2024-06-20T15:56:17+02:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/patches/series
- + debian/patches/use_pickle.patch


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+obitools (1.2.13+dfsg-9) unstable; urgency=medium
+
+  [ Sudip Mukherjee ]
+  * Use pickle to fix error with extractreads. (Closes: #1073586)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 20 Jun 2024 09:39:45 +0200
+
 obitools (1.2.13+dfsg-8) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/patches/series
=====================================
@@ -5,3 +5,4 @@ port_python3.patch
 deocde-bytes-to-str.patch
 no_cython_in_binary_package.patch
 qsort.patch
+use_pickle.patch


=====================================
debian/patches/use_pickle.patch
=====================================
@@ -0,0 +1,18 @@
+Description: Use pickle, cPickle is not available now.
+
+Bug-Debian: https://bugs.debian.org/1073586
+Forwarded: no
+Last-Update: 2024-06-18
+---
+
+--- obitools-1.2.13+dfsg.orig/src/obitools/word/_readindex.pyx
++++ obitools-1.2.13+dfsg/src/obitools/word/_readindex.pyx
+@@ -8,7 +8,7 @@ from cpython.bytes cimport PyBytes_FromS
+ import sys
+ 
+ from threading import Lock
+-from cPickle import dumps,loads
++from pickle import dumps,loads
+ 
+ from obitools._obitools import NucSequence
+ from turtle import Tbuffer



View it on GitLab: https://salsa.debian.org/med-team/obitools/-/compare/fd4fb6a94c0e9e62a89be1f41fc68c7be7c93d1e...0c4e10615a5b1afb4264b1d25049406c7a0b1392

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View it on GitLab: https://salsa.debian.org/med-team/obitools/-/compare/fd4fb6a94c0e9e62a89be1f41fc68c7be7c93d1e...0c4e10615a5b1afb4264b1d25049406c7a0b1392
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